View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18056_high_1 (Length: 737)

Name: NF18056_high_1
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18056_high_1
NF18056_high_1
[»] chr4 (19 HSPs)
chr4 (18-648)||(5035063-5035695)
chr4 (112-600)||(2533805-2534294)
chr4 (11-588)||(2525259-2525837)
chr4 (24-576)||(2490641-2491195)
chr4 (45-501)||(2518821-2519279)
chr4 (25-368)||(2486021-2486373)
chr4 (29-101)||(2536575-2536647)
chr4 (221-419)||(2467212-2467413)
chr4 (24-175)||(2467446-2467597)
chr4 (280-412)||(2547221-2547353)
chr4 (295-418)||(2621417-2621540)
chr4 (295-340)||(2361217-2361262)
chr4 (291-340)||(2381641-2381690)
chr4 (291-340)||(2391269-2391318)
chr4 (300-340)||(12124594-12124634)
chr4 (310-340)||(2482529-2482559)
chr4 (24-98)||(5106306-5106380)
chr4 (359-413)||(5106632-5106686)
chr4 (456-501)||(2477156-2477201)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 5035695 - 5035063
Alignment:
Q  18 aacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctt 117  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||  | || ||| ||||||    
T  5035695 aacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctt 5035596  T
Q  118 tccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggcgagtttct 215  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |  | |   ||  |||||||||  ||||||||||||||||    
T  5035595 tccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggcgagtttct 5035496  T
Q  216 agcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatg 315  Q
    |||  |||||||  ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||||||| |||||||||||| ||||||||    
T  5035495 agcgaaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatg 5035396  T
Q  316 aaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatcc 415  Q
    |||| ||| || |||||| |||||||||||||||||||||||||||||||||||||   | | |||||||||||||||||||  ||||||||||| ||||    
T  5035395 aaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatcc 5035296  T
Q  416 ttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgt 515  Q
    |||| || |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| | |||| |||    
T  5035295 ttactgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgt 5035196  T
Q  516 ctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatatgcgtatggtggtcct 615  Q
    | |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||    
T  5035195 cggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttcgtggtcct 5035096  T
Q  616 cttcctcctctacaatatcaatgagcttcaaga 648  Q
    | |||||||||||||||||||||||||||||||    
T  5035095 cgtcctcctctacaatatcaatgagcttcaaga 5035063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 112 - 600
Target Start/End: Complemental strand, 2534294 - 2533805
Alignment:
Q  112 tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagggg---gaccgagaagccgacctc-ggc 207  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |  |  | ||   | ||| |||||||||||| |||    
T  2534294 tccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctcccgatgggtggtttgtccgtgaagccgacctctggc 2534195  T
Q  208 gagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcca 307  Q
    |||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2534194 gagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtcca 2534095  T
Q  308 agaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaaga 407  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||||||||  || |||||    
T  2534094 agaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaaga 2533995  T
Q  408 actcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgc 507  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||      
T  2533994 actcatccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcat 2533895  T
Q  508 aataacgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatat 600  Q
    |||| |||| ||| |||||||||||| ||||||||||||||||||||    ||||||||| |||||||||||||||||||  |||||||||||    
T  2533894 aatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtga---ccttcaagagctcaaagtggttggtggttgctttgcacgatat 2533805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 2525837 - 2525259
Alignment:
Q  11 catcatcaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctaca 110  Q
    ||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||| ||||||||| || ||     
T  2525837 catcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaact 2525738  T
Q  111 ctccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctc-cttaa---gggggaccgagaagccgacctcgg 206  Q
     ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||  |   ||||| ||||||||| |||||| |    
T  2525737 atcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctctctctcgatgcgggggcccgagaagctgacctcag 2525638  T
Q  207 cgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcc 306  Q
     |||||||||  ||||||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || ||| |||||||||| || | |||||||    
T  2525637 tgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtcc 2525538  T
Q  307 aagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaag 406  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | ||||||||||||||||||||   |||||||    
T  2525537 aagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaag 2525438  T
Q  407 aactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcg 506  Q
    |||||||||||||||||||||||||||    ||| ||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||     
T  2525437 aactcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactca 2525338  T
Q  507 caataacgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgt 588  Q
     | || ||   ||   |||||| ||||||||||||||| |||||||||    ||||||||||||||||||||||||||||||    
T  2525337 tactatcgcgggtcaacactcagttaagaatctctgcaggaactgtga---ccttcaagaggtcaaagtggttggtggttgt 2525259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 24 - 576
Target Start/End: Complemental strand, 2491195 - 2490641
Alignment:
Q  24 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 123  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| | ||||| ||||||| | || ||| ||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  124 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct--ccttaagggggaccgagaagccgacctcggcgagtttctagccca 221  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| ||||||  ||   |  || ||| |||||  |||||| ||||| |||| |  ||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggaca 2490996  T
Q  222 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 321  Q
    |||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||||||||||  || ||||||||||    
T  2490995 aatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaat 2490896  T
Q  322 ttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccg 421  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||  ||||| ||||||||||| ||||    
T  2490895 ttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccg 2490796  T
Q  422 acactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgg 521  Q
    |||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| |||||||||| |||  |||  | |  ||      
T  2490795 acaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaa 2490696  T
Q  522 gcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtg 576  Q
     |||||| ||||  ||||||||||||||||||| ||||||||||||| |||||||    
T  2490695 tcactcagttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg 2490641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 45 - 501
Target Start/End: Complemental strand, 2519279 - 2518821
Alignment:
Q  45 gtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttcc 144  Q
    ||||||||||||||||||||||||||||| ||  |||||| ||  |||| ||||||  |    ||| ||||||||||| ||||||||||||| |||||||    
T  2519279 gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc 2519180  T
Q  145 ctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttaga 242  Q
    | ||  |||||||||| || |||||||||||| |  |||   ||  |||||||| | ||||| ||||| ||||| || |||| |  |||| |||||||||    
T  2519179 ccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttaga 2519080  T
Q  243 cctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttat 342  Q
    ||||| ||| |||||||||||||| |||  ||   | ||| || | | ||| | |||||||||  | || |||||||||||||||| |||||||||||||    
T  2519079 cctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttat 2518980  T
Q  343 caaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccgacactggttgtccccataatt 442  Q
     |||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||| ||||||||||||||||||| ||   || | || || |||    
T  2518979 taaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccatttataccaatgatt 2518880  T
Q  443 gtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 501  Q
      |  ||||||| ||||  || |||| |||||||||| |||||||||| ||||||||||    
T  2518879 tggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgcttta 2518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 25 - 368
Target Start/End: Complemental strand, 2486373 - 2486021
Alignment:
Q  25 gtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaa 124  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||| ||||| ||||||| |    ||| ||||||||||| |    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  125 tcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagtttctagcccaa 222  Q
    |||||||||| |  ||||||||||| ||||||| |  ||||||||||||||| |  |||   || || |||||   |||||||||||| ||||  | ||     
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacat 2486174  T
Q  223 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 322  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | |||||||||||||| |||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  323 tgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 368  Q
    |||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486073 tgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 2536647 - 2536575
Alignment:
Q  29 caggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctcc 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc 2536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 221 - 419
Target Start/End: Complemental strand, 2467413 - 2467212
Alignment:
Q  221 aaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaa 320  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  321 tttgacatctctcacttgttatcaaatgagatt---tatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatcctt 417  Q
    ||||||||| ||||||||||| | |||    ||   |||| ||||||| |||||   | |||||||||||||||||||||  |||||||| |||||||||    
T  2467313 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatcctt 2467214  T
Q  418 ac 419  Q
    ||    
T  2467213 ac 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 2467597 - 2467446
Alignment:
Q  24 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 123  Q
    ||||||| |||||||||| |||| |||||||||||| ||||||| |||||  | ||||||||||  |||   || ||| | |  ||| ||||||| |||     
T  2467597 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 2467498  T
Q  124 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc 175  Q
    |||||||||||||||||||||| ||||| | |||| || | |||||||||||    
T  2467497 atcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc 2467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 412
Target Start/End: Complemental strand, 2547353 - 2547221
Alignment:
Q  280 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 379  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  380 ttgctgattgtttcccttccctcgaagaactca 412  Q
    ||||||||||||||||||  || ||||||||||    
T  2547253 ttgctgattgtttccctttacttgaagaactca 2547221  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 418
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  295 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 394  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  395 cttccctcgaagaactcatcctta 418  Q
    |||  ||||||||||||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  295 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 340  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  291 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 340  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  291 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 340  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  300 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 340  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 310 - 340
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  310 aagatgaaaaatttgacatctctcacttgtt 340  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 5106306 - 5106380
Alignment:
Q  24 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatc 98  Q
    ||||||| |||||||||   ||| |||||||||||| ||||||||||||| || | |||||||| ||||| ||||    
T  5106306 agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc 5106380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  359 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcat 413  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  456 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 501  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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