View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18056_high_13 (Length: 320)

Name: NF18056_high_13
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18056_high_13
NF18056_high_13
[»] chr2 (4 HSPs)
chr2 (13-121)||(32226478-32226586)
chr2 (209-302)||(32218671-32218764)
chr2 (13-67)||(32217176-32217230)
chr2 (62-121)||(32218524-32218583)
[»] chr6 (1 HSPs)
chr6 (250-302)||(24240140-24240191)
[»] chr4 (2 HSPs)
chr4 (47-98)||(9635321-9635372)
chr4 (47-98)||(9624708-9624759)
[»] chr8 (2 HSPs)
chr8 (13-104)||(8082838-8082931)
chr8 (13-65)||(32675844-32675896)
[»] chr7 (1 HSPs)
chr7 (21-73)||(17264182-17264234)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 32226478 - 32226586
Alignment:
Q  13 aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatattatatagtgtatcc 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  32226478 aatataatattcttattggtaaatttgttgaagtgtataattgaaagtgaaaaattcatcccaaatcatgtattttctttgtatattatacagtgtatcc 32226577  T
Q  113 tccgatcac 121  Q
    ||| |||||    
T  32226578 tccaatcac 32226586  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 32218671 - 32218764
Alignment:
Q  209 gaatgaatctaaaatattgaattttagatataacattaatatttttgttcttctttttacttgttagatgattagatatgacacatagatgatg 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  32218671 gaatgaatctaaaatattgaattttagatataacattaatacttttgttcttctttttacttgttagatgattagatatgatacagagatgatg 32218764  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 32217176 - 32217230
Alignment:
Q  13 aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaat 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32217176 aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaat 32217230  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32218524 - 32218583
Alignment:
Q  62 aaaaattcatcccaaatcatgtattctctttgtatattatatagtgtatcctccgatcac 121  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  32218524 aaaaattcatcccaaatcatgtattctctttgtatattatacaatgtatccaccgatcac 32218583  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 24240140 - 24240191
Alignment:
Q  250 tttttgttcttctttttacttgttagatgattagatatgacacatagatgatg 302  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  24240140 tttttgtt-ttctttttacttgttagatgattagatatgacacagagatgatg 24240191  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9635372 - 9635321
Alignment:
Q  47 gtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatat 98  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||| |||||    
T  9635372 gtataattggaagtgaaaaattcaacccaaaacatgtattctctttatatat 9635321  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9624759 - 9624708
Alignment:
Q  47 gtataattgaaagtgaaaaattcatcccaaatcatgtattctctttgtatat 98  Q
    ||||||||| |||||||||||||| |||||| |||||||| ||||| |||||    
T  9624759 gtataattggaagtgaaaaattcaacccaaaacatgtattttctttatatat 9624708  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 8082838 - 8082931
Alignment:
Q  13 aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatccc-aaatc-atgtattctctttgtatattatata 104  Q
    ||||||| ||| ||||  |||| |||||| | | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| |||||    
T  8082838 aatataacatttttatatgtaaatttgtttatgggtataattgaaagtgaaaaagtcatcccaaaatcaatgtattctctttatatataatata 8082931  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 32675896 - 32675844
Alignment:
Q  13 aatataatattcttattggtaagtttgttgaagtgtataattgaaagtgaaaa 65  Q
    |||||||||||||||| || ||||||||| ||| |||||||||||| ||||||    
T  32675896 aatataatattcttataggcaagtttgtttaagggtataattgaaaatgaaaa 32675844  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 17264234 - 17264182
Alignment:
Q  21 attcttattggtaagtttgttgaagtgtataattgaaagtgaaaaattcatcc 73  Q
    ||||||||||| || |||||| |||  ||||||||||||||||||| ||||||    
T  17264234 attcttattggcaaatttgtttaaggctataattgaaagtgaaaaagtcatcc 17264182  T

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