View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_high_16 (Length: 307)
Name: NF18056_high_16
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 46040563 - 46040271
Alignment:
| Q |
1 |
taaaaatcgaaacagcatttttgaattggcacttaaggtaaatatcttgctttataattaaattcattcttaacatgtaaagtcaaattaaaagatccgt |
100 |
Q |
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| T |
46040563 |
taaaaatcgaaacagcatttttgaattggcacttaaggtaaatatcttgctttataattaaattcattcttaacatgtaaagtcaaattaaaagatccat |
46040464 |
T |
|
| Q |
101 |
aagtataatttttagaattattaattataattacttaaatatgtatcatgttattaacaatacaacttcataacaaatctagtaaaagtctgtatgataa |
200 |
Q |
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| T |
46040463 |
aagtataatttttagaattattaattataattacttaaatatgtatcatgttattaacaatacaacttcataacaaatctagtaaaagtctgtatgataa |
46040364 |
T |
|
| Q |
201 |
tcttgttaaagtcaactaagtaggtttcgagtcaccagaaaactaattcgatatgcattatgcatatctgcaggtaagggaactgaagaatgt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46040363 |
tcttgttaaagtcaactaagtaggtttcgagtcaccataaaactaattcgatatgcattatgcatatctgcaggtaagggaactgaagaatgt |
46040271 |
T |
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