View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18056_high_25 (Length: 254)
Name: NF18056_high_25
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_25 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 3677616 - 3677741
Alignment:
| Q |
129 |
gttcatagagtcgtagaaacgcaatcaaatacgcctacctcaatatcaatacagccaaggactttagaagggttttaggtattatattttgaatctagtg |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3677616 |
gttcatagagtcgtataaacgcaatcaaatacgcctacctcaatatcaatacagccaaggactttagaagggttttaggtattatattttgaatctagtg |
3677715 |
T |
|
| Q |
229 |
taagaaaaataattttaaaaagtgaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3677716 |
taagaaaaataattttaaaaagtgaa |
3677741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 3677501 - 3677574
Alignment:
| Q |
14 |
caaagggtacagcttctagaagatagaacttcaagcaaggcatgttcatatataatagggtttgatcttggaat |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3677501 |
caaagggtacagcttctagaagatagaacttcaagcaaggcatgttcatatataatagggtttgatcttggaat |
3677574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University