View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_high_36 (Length: 219)
Name: NF18056_high_36
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 15687174 - 15686984
Alignment:
| Q |
18 |
acaataaagctcattgctttgctgttggaggtaaatcatttattatcccttannnnnnnnnnnnnnngtatgattcaatgaataatattcaatttggata |
117 |
Q |
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| T |
15687174 |
acaataacgctcattgctttgctgttggaggtaaatcatttattatcccttaatatataatatatatgtatgattcaatgaataatattcaatttggata |
15687075 |
T |
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| Q |
118 |
aaatttatgcctgtgtctacgtcatgatgtaaacatatatgtatatgagaaaatggaagatgtaatatcaatatttttataattttcttcg |
208 |
Q |
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| T |
15687074 |
aaatttatgcgtgtgtctatgtcatgatgtacacatatatgtatatgagaaaatggaagatgtaatatcaatatttttataattttgttcg |
15686984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 15622514 - 15622477
Alignment:
| Q |
85 |
gtatgattcaatgaataatattcaatttggataaaatt |
122 |
Q |
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| T |
15622514 |
gtatgattcattgaataatattcaattttgataaaatt |
15622477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 29214070 - 29214260
Alignment:
| Q |
18 |
acaataaagctcattgctttgctgttggaggtaaatcatttattatcccttannnnnnnnnnnnnnngtatgattcaatgaataatattcaatttggata |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29214070 |
acaataacgctcattgctttgctgttggaggtaaatcatttattatcccttaatatataatatatatgtatgattcaatgaataatattcaatttggata |
29214169 |
T |
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| Q |
118 |
aaatttatgcctgtgtctacgtcatgatgtaaacatatatgtatatgagaaaatggaagatgtaatatcaatatttttataattttcttcg |
208 |
Q |
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| T |
29214170 |
aaatttatgcgtgggtctatgtcatgatgtacacatatatgtatatgagaaaatggaagatgtaatatcaatatttttataattttgttcg |
29214260 |
T |
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