View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18056_high_38 (Length: 210)
Name: NF18056_high_38
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10676741 - 10676536
Alignment:
| Q |
1 |
acattattgttccttattcatgtcgtcgccttcatcatcagagttgtacgaacgagaaaggtggcacccccacttctaccgtactgaactatatatgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10676741 |
acattattgttccttattcatgtcgtcgccttcatcatcagagttgtacgaacgagaaaggtggcacccccacttctaccgtactgaactatatatgaag |
10676642 |
T |
|
| Q |
101 |
acattagtttgtaacgagcaacacttctatggtcacaagcacaaattttttcgatttagcaacacttctaaatccaaaacatttgtgtttgtgaccataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10676641 |
acattagtttgtaacgagcaacacttctatggtcacaagcacaaaaattttcgatttaccaacacttctaaatccaaaacatttgtgtttgtgaccataa |
10676542 |
T |
|
| Q |
201 |
aagtct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
10676541 |
aagtct |
10676536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10673660 - 10673524
Alignment:
| Q |
1 |
acattattgttccttattcatgtcgtcgccttcatcatcagagttgtacg---aacgagaaaggtggcacccccacttctaccgtactgaactatatatg |
97 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||| | ||| | ||||| ||||||||| ||||||||||||||| ||| || | |
|
|
| T |
10673660 |
acattattgttccttattcatgtcgtcacattcattatcagagccgcacgtctgaggagaagggtggcacctccacttctaccgtacagaa----ttaag |
10673565 |
T |
|
| Q |
98 |
aagacattagtttgtaacgagcaacacttctatggtcacaa |
138 |
Q |
| |
|
| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
10673564 |
ctggcattagtttgtaaggtgcaacacttctatggtcacaa |
10673524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University