View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_high_4 (Length: 601)
Name: NF18056_high_4
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 32 - 585
Target Start/End: Original strand, 14788175 - 14788728
Alignment:
| Q |
32 |
acctttgtttgggttgtcagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcat |
131 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14788175 |
acctttgtttgggttgttagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaaaacacgattaattttgaaggtgtccatgcttcat |
14788274 |
T |
|
| Q |
132 |
ggaatattagtgtatcaaannnnnnnnnnagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788275 |
tgaatattagtgtatcaaattttttttttagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
14788374 |
T |
|
| Q |
232 |
tgagaaagatgtattttacaccttacaactttagaaattgacattttttacttataatatatcacttatttccatttttaccttcataacaagcacttgt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14788375 |
tgagaaagatgtattttacaccttacaactttagaaattgacattttttacttataatatatcacttatttccttttttaccttcataacaagcacttgt |
14788474 |
T |
|
| Q |
332 |
tagcatgagtctattttctaatattattctttcattgttgcttcaaataaactttgtccttattggtatacacgttttttatattaattcacacaacaca |
431 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788475 |
tagcatgagtctattttctaatattattttttcattgttgcttcaaataaactttgtccttattggtatacacgttttttatattaattcacacaacaca |
14788574 |
T |
|
| Q |
432 |
tctgttgcaataaacattttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgag |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788575 |
tctgttgcaataaacattttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgag |
14788674 |
T |
|
| Q |
532 |
ttaccttgatgatgagcctcatagagactcttttaatagtttctatggagatag |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14788675 |
ttaccttgatgatgagcctcatagagactcttttaatagtttctatggagatag |
14788728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 15229212 - 15229430
Alignment:
| Q |
32 |
acctttgtttgggttgtcagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcat |
131 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15229212 |
acctttgtttgggttgttagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaaaacacgattaattttgaaggtgtccatgcttcat |
15229311 |
T |
|
| Q |
132 |
ggaatattagtgtatcaaannnnnnnnnnagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15229312 |
tgaatattagtgtatcaaattttttttttagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
15229411 |
T |
|
| Q |
232 |
tgagaaagatgtattttac |
250 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
15229412 |
tgagaaagatgtattttac |
15229430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 15239337 - 15239555
Alignment:
| Q |
32 |
acctttgtttgggttgtcagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcat |
131 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
15239337 |
acctttgtttgggttgtgagacagtgacacgtgttgtacgagtatcatacaaatgtcggacatggagacacgattaattttggaggtgtccatgcttcat |
15239436 |
T |
|
| Q |
132 |
ggaatattagtgtatcaaannnnnnnnnnagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
231 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15239437 |
tcaatattaatgtatcaaattttatttttagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
15239536 |
T |
|
| Q |
232 |
tgagaaagatgtattttac |
250 |
Q |
| |
|
||||||||||||||||||| |
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| T |
15239537 |
tgagaaagatgtattttac |
15239555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 32 - 354
Target Start/End: Complemental strand, 17544797 - 17544475
Alignment:
| Q |
32 |
acctttgtttgggttgtcagacggtgacacgtattgtacgagtatcatacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcat |
131 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
17544797 |
acctttgtttgggttgtgagacagtgacacgtgttgtacgagtatcatacaaatgtcggacatggagacacgattaattttggaggtgtccatgcttcat |
17544698 |
T |
|
| Q |
132 |
ggaatattagtgtatcaaannnnnnnnnnagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
231 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17544697 |
tcaatattaatgtatcaaattttatttttagtatctaggttgtattttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacacct |
17544598 |
T |
|
| Q |
232 |
tgagaaagatgtattttacaccttacaactttagaaattgacattttttacttataatatatcacttatttccatttttaccttcataacaagcacttgt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17544597 |
tgagaaagatgtattttacaccttacaactttagaaattgacattttttacttataatatatcacttatttccttttttaccttcataacaagcacttgt |
17544498 |
T |
|
| Q |
332 |
tagcatgagtctattttctaata |
354 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
17544497 |
tagcatgagtctatgttctaata |
17544475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 346 - 585
Target Start/End: Complemental strand, 17544057 - 17543819
Alignment:
| Q |
346 |
tttctaatattattctttcattgttgcttcaaataaactttgtccttattggtatacacgttttttatattaattcacacaacacatctgttgcaataaa |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
17544057 |
tttctaatattattctttcattgttgcttcaaataaactttgtccttattggtatacacattttt-atattaattcacacaacacatctgttgcaataaa |
17543959 |
T |
|
| Q |
446 |
cattttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17543958 |
cattttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
17543859 |
T |
|
| Q |
546 |
agcctcatagagactcttttaatagtttctatggagatag |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17543858 |
agcctcatagagactcttttaatagtttctatggagatag |
17543819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 9045163 - 9045229
Alignment:
| Q |
258 |
aactttagaaattgacattttttacttataatatatcacttatttccatttttaccttcataacaag |
324 |
Q |
| |
|
||||||||||||| || |||||||||| ||| ||||||||||||| |||||||||||| ||||||| |
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|
| T |
9045163 |
aactttagaaattaactttttttactttaaatttatcacttatttctatttttaccttcttaacaag |
9045229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 35507203 - 35507145
Alignment:
| Q |
258 |
aactttagaaattgacattttttacttataatatatcacttatttccatttttaccttc |
316 |
Q |
| |
|
|||| ||||||||||| |||||||| | ||| ||||||||||||||||||||| |||| |
|
|
| T |
35507203 |
aactctagaaattgactttttttaccttgaatttatcacttatttccatttttagcttc |
35507145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 47506 - 47458
Alignment:
| Q |
292 |
atcacttatttccatttttaccttcataacaag-cacttgttagcatga |
339 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||| ||||||||||||||| |
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|
| T |
47506 |
atcacttaattccatttttaacttcttaacaagtcacttgttagcatga |
47458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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