View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_high_9 (Length: 369)
Name: NF18056_high_9
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_high_9 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28935720 - 28935509
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaacc-attaatattcatccgaggattgaaattgaatcttctcatcgctcagaataatcactcatctcatttgatac |
99 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||| |
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| T |
28935720 |
agtattttaacaataattaatttgaacccattaatattcatctaaggattgaaattgaatcctctcatcgctcacaataaccactcctcttatttgatac |
28935621 |
T |
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| Q |
100 |
atgctctctgtatatatgcaagcaaatatcaaacttagacaatactctcctaaggtttggaccacaattctaagattcatagatagtgtattaaaaaact |
199 |
Q |
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||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935620 |
atgttctctatatatatgcaagcaaatatcaaacttagacgatactctcctaaggtttggaccacaattctaagattcatagatagtgtattaaaaaact |
28935521 |
T |
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| Q |
200 |
agatcatattta |
211 |
Q |
| |
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|||||||||||| |
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| T |
28935520 |
agatcatattta |
28935509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 28935460 - 28935337
Alignment:
| Q |
227 |
gcataatatgattaacacatttctaaggcaacgaaaatattgaaaggtagaatacacacacactaaagtgttatagaaatgaacaacattatgatggaaa |
326 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28935460 |
gcataatatgattaacacatttctaagccaatgaaaatattgaaaggtagaatacacacacactatagtgttatagaaatgaacaacattatgatggaaa |
28935361 |
T |
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| Q |
327 |
aaataaaagtataggcttaggtgc |
350 |
Q |
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| T |
28935360 |
aaataaaagtataggcttaggtgc |
28935337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14888 - 14929
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaaccattaatattcatcc |
42 |
Q |
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| T |
14888 |
agtattttaacaataattaatctgaaccattaatattcatcc |
14929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54999918 - 54999877
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaaccattaatattcatcc |
42 |
Q |
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| T |
54999918 |
agtattttaacaataattaatctgaaccattaatattcatcc |
54999877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45060478 - 45060519
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaaccattaatattcatcc |
42 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45060478 |
agtattttaacaataattaatctgaaccattaatattcatcc |
45060519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45081590 - 45081549
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaaccattaatattcatcc |
42 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45081590 |
agtattttaacaataattaatctgaaccattaatattcatcc |
45081549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6412683 - 6412747
Alignment:
| Q |
1 |
agtattttaacaataattaatttgaaccattaatattcatccgaggattgaaattgaatcttctc |
65 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||| ||| || | |||||||| |||| |
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| T |
6412683 |
agtactttaacagtaattaatttgaaccattaatattcatccaagggttaagattgaatcctctc |
6412747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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