View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18056_low_12 (Length: 348)
Name: NF18056_low_12
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 6542112 - 6542433
Alignment:
| Q |
17 |
atcatcatgttttgttactatcggagaacattgctcttccctaataacctcaaattcagattcaaaacactaacagtaacacaatcttcatttcttctct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6542112 |
atcatcatgttttgttactatcggagaacattgctcttccctaataacctcaaattcagattcaaaacactaacagtaacacaatcttcatttcttctcc |
6542211 |
T |
|
| Q |
117 |
aacccttttcttcatctaccaaacaacaacaacactctttcacagtcaactatctcattcaaaatcttgatttttccccacaaacagcttccaaactctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
6542212 |
aacccttttcttcatctaccaaacaacaacaacactctttcacagttaactatctcattcaaaatcttggtttctccccacaaacagcttccaaactctc |
6542311 |
T |
|
| Q |
217 |
caaacgacttcaactcaacaactcacaaaaaccagactcagtcctcttattattcaaatcatatggcttctcaaactcccagttatcaactctcatcaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6542312 |
caaacgacttcaactcaacaactcacaaaaaccagactcagtcctcttattattcaaatcctatggcttctcaaactcccagttatcaactctcatcaaa |
6542411 |
T |
|
| Q |
317 |
acctaccctaatcttctctctg |
338 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6542412 |
acctaccctaatcttctctctg |
6542433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 149 - 318
Target Start/End: Original strand, 6533495 - 6533664
Alignment:
| Q |
149 |
cactctttcacagtcaactatctcattcaaaatcttgatttttccccacaaacagcttccaaactctccaaacgacttcaactcaacaactcacaaaaac |
248 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| || ||||| ||| |||| ||||| ||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6533495 |
cactcttttacagtcaactacctcattcaaaattgtgggttttcaccagaaactgcttctaaactctccaaacgagttcttctcaacaactcacaaaaac |
6533594 |
T |
|
| Q |
249 |
cagactcagtcctcttattattcaaatcatatggcttctcaaactcccagttatcaactctcatcaaaac |
318 |
Q |
| |
|
| || ||||||||| ||||||||||| ||||| ||||| || ||||| |||||| ||||||||||||| |
|
|
| T |
6533595 |
ctgattcagtcctcgccttattcaaatcctatggtttctctaattcccaattatcatctctcatcaaaac |
6533664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University