View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18056_low_14 (Length: 330)
Name: NF18056_low_14
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 33224496 - 33224324
Alignment:
| Q |
146 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33224496 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttgggaatgtgatgaga |
33224397 |
T |
|
| Q |
246 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33224396 |
agagagatatagatgaatttaagtatagaatgaattttgagaaattatgagtgtcgaaatatcattgttcatt |
33224324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 36 - 318
Target Start/End: Complemental strand, 33227523 - 33227240
Alignment:
| Q |
36 |
atatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt-tcaagtatcctctagtcaag |
134 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | || || ||| |||||||||| |
|
|
| T |
33227523 |
atatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaatgctccttgctaaaagtctcctctcttatggtctagtcaag |
33227424 |
T |
|
| Q |
135 |
gtatgtaacctattataatttaaggctgtggagttgcttattgcattaggaaaatatttcatgagactagagatgggatgaaaaatgtaatattttggga |
234 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
33227423 |
gtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatttcatgagactagagatggggtgatagatgtaatattttggga |
33227324 |
T |
|
| Q |
235 |
atgtgatgagaagagagatatagatgaatttaagtatagaatgaattttgagaaattgtgagtgtcgaaatatcattgttcatt |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33227323 |
atgtgatgagaagagagatagagatgaatttaagtgtagaatgaatgttgagaaattgtaagtgttgaaatatcattgttcatt |
33227240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 33225372 - 33225234
Alignment:
| Q |
15 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33225372 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatgcttgctaattggctt |
33225273 |
T |
|
| Q |
115 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33225272 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
33225234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University