View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_18 (Length: 314)
Name: NF18056_low_18
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 15854258 - 15853966
Alignment:
| Q |
9 |
aattatgcgtaaaatcaatatcagcagcaagtccgaatggtttttaaacggtaagatttttaacacactagatacagaattttattaaatgctactatca |
108 |
Q |
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| T |
15854258 |
aattatgcgtaaaatcaatatcagccgcaagtccgaatggtttttaaacggtaagatttttaacacactagatacagaattttattaaatgctactatca |
15854159 |
T |
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| Q |
109 |
ttttgacagcagttgttaagtcttttgattgatgttaactgtagtagaaatggttaaaagatttgattggatgtataagctggatatttctatgtatgta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15854158 |
ttttgacagcagttgttaagtcttttgattgatgttaactgtagtagaaatgtttaaaagatttgattggatgtataagctggatatttctatgcatgta |
15854059 |
T |
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| Q |
209 |
tatgctacagagnnnnnnngttgcatgtgtgtgaactgaaaataaagtaaaatattattatttacaaattttaagtgatatgtcaatgtgttcat |
303 |
Q |
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| T |
15854058 |
tatgctacagagaaaaaaagttgca--tgtgtgaactgaaaataaagtaaaatattattatttacaaattttaagtgatatgtcaatgtgttcat |
15853966 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 10691085 - 10691242
Alignment:
| Q |
9 |
aattatgcgtaaaatcaatatcagcagcaagtccgaatggtttttaaacggtaagatttttaacacactagatacagaattttattaaatgctactatca |
108 |
Q |
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||||||||||||||| || | |||| |||||| |||||| ||||||| ||| | ||||| ||||| ||||| | ||||||| |||||||| ||| |
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| T |
10691085 |
aattatgcgtaaaataaacactagcaacaagtcggaatgggttttaaatggtgggttttttgacaca--agatatactcttttattgaatgctacgttca |
10691182 |
T |
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| Q |
109 |
ttttgacagcagttgttaagtcttttgattgatgttaactgtagtagaaatggttaaaag |
168 |
Q |
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| T |
10691183 |
ctttgatagcaattgttaagtcttttggttgattttaactgtattagaaatgtttaaaag |
10691242 |
T |
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