View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18056_low_2 (Length: 699)

Name: NF18056_low_2
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18056_low_2
NF18056_low_2
[»] chr2 (1 HSPs)
chr2 (418-683)||(274714-274975)
[»] chr3 (9 HSPs)
chr3 (227-373)||(5565257-5565403)
chr3 (85-218)||(5565170-5565302)
chr3 (185-301)||(31896518-31896633)
chr3 (103-183)||(14175288-14175364)
chr3 (185-301)||(31945875-31945990)
chr3 (266-319)||(13539565-13539618)
chr3 (185-301)||(31912227-31912342)
chr3 (110-178)||(13539487-13539552)
chr3 (185-301)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (47-138)||(43618606-43618697)
[»] chr7 (1 HSPs)
chr7 (95-142)||(7854246-7854293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-196)||(257658-257735)
[»] scaffold0003 (2 HSPs)
scaffold0003 (202-301)||(42747-42845)
scaffold0003 (185-301)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (202-301)||(27444516-27444614)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 418 - 683
Target Start/End: Original strand, 274714 - 274975
Alignment:
Q  418 acaagatatcaccattactggtgcgagcaccttgcctggtgatgaggtatatcttctaatcattcatttacttctacaaattgtatgtaatctttaccta 517  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     || ||||||| ||||||| ||| ||     
T  274714 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttccaatcattcatttg----tataaattgtttgtaatccttatctg 274809  T
Q  518 cttactacttcagaaggannnnnnnngttactccagcgttgatgtgggaagtttttctggtgtttataattatctctcagatgatatacaagttgagagg 617  Q
    ||| ||||||| | ||||        ||||||||||| ||||||||||||| | ||| |||||||||||||||||||  |||||| |||| |||||||||    
T  274810 cttgctacttctggaggattttttttgttactccagcattgatgtgggaagctgttccggtgtttataattatctcttggatgatgtacaggttgagagg 274909  T
Q  618 gtggtcaaggaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaag 683  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  274910 atggtcaatgaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaag 274975  T

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Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 227 - 373
Target Start/End: Original strand, 5565257 - 5565403
Alignment:
Q  227 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaattgttat 326  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||| ||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  327 tttcagtttttgtattcctcatttctaatactgaatcattcattgat 373  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgat 5565403  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  85 ttttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccac 184  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  185 catcgttgaccatcgcatcggaattcgctcttca 218  Q
    | ||||||||||  || |||||||||||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  185 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 284  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  103 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcacca 183  Q
    ||||||||||||||||   |||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctac-aaaacccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  185 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 284  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 13539565 - 13539618
Alignment:
Q  266 ctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaa 319  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||    
T  13539565 ctcttcatcgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  185 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 284  Q
    |||||||||||| ||| |||||||  |||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 13539487 - 13539552
Alignment:
Q  110 aaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttg 178  Q
    ||||||||||| |||||||||||||||||||||  | |||||||| |||||| ||||| ||||||||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctct--gcaaacccacatgcttt-caccatgccggagttg 13539552  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  185 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 284  Q
    |||||||||||| ||| || ||||  |||||| | |||  | |||||| |||||| ||||| ||||||||||  || ||||||||||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcaga-ttcgctcttcatcgcgccagtgt 31688332  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 43618697 - 43618606
Alignment:
Q  47 acacgaaaacccttcttcttattccctcatttcgttaattttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatc 138  Q
    |||| ||||||||||||||||| |||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatc 43618606  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 7854246 - 7854293
Alignment:
Q  95 ttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 142  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 7854293  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  118 catcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccaccatcgttgacca 196  Q
    |||||||||||| ||||| |||||| | |||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  202 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 301  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 36686 - 36571
Alignment:
Q  185 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 284  Q
    ||||||||| || ||| | |||||  |||||| | ||| || |||||| | |||||||||| ||||||| || ||| ||||||||||| |||| | | ||    
T  36686 catcgttgatcaccgcgttggaatatgctcttaaccgcgccggagttgcatcaccgttgttaatcaccgtgtcgga-ttcgctcttcatcgcgccagtgt 36588  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  36587 cgctgttagaagcttct 36571  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  202 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 301  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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