View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_23 (Length: 287)
Name: NF18056_low_23
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 40574278 - 40574011
Alignment:
| Q |
13 |
aatatatttctaaaaagaatcttaaaatttgtaagtgatgttttctttttgacagcatagataagtccataatcatggacatctagnnnnnnnatttctt |
112 |
Q |
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| T |
40574278 |
aatatatttctaaaaagaatcttaaaatttttaagtgatgttttgtttttgacagcatagataagtccataatcatggacatctagtttttttatttctt |
40574179 |
T |
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| Q |
113 |
ggct----atgaacgtggcagtcaatggatggaatttccgtgcatgtttaacaagtggtgcaaaaatttccattccatgtggaacaatgatttgacggcc |
208 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
40574178 |
ggctatgaatgaacgtggcagtcagtggatggaatttccgtgcatgtttaacaagtggtgcaaacatttccattccatgtggaacaatgatttgatggcc |
40574079 |
T |
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| Q |
209 |
ttatctatttttgttttgatccaatcttccacttccatatgctagaatgcatataaatagttcatcac |
276 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574078 |
ttatctatttttgttttgattcaatcttccacttccatatgctagaatgcatataaatagttcatcac |
40574011 |
T |
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