View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_25 (Length: 272)
Name: NF18056_low_25
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 6720964 - 6721209
Alignment:
| Q |
13 |
aaaatatgaaaaaacttgtgactnnnnnnngagttacaatcaaagcatgcatgtagctaaaagcaacaatctgagattgaacatcaacatattgnnnnnn |
112 |
Q |
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| T |
6720964 |
aaaatatgaaaaaacttgtgactaaaaaaagagttacaatcaaagcatgcatgtagctaaaagcaacaatctgagattgaacatcaacatattgaaaaaa |
6721063 |
T |
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| Q |
113 |
ntcatcaagtaatgannnnnnn-actctttaaaataggaaagattgaataaaattggcaatattcaagttcataataaatacctcatttaacaaacaaaa |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6721064 |
atcatcaagtaatgattttttttactctttaaaataggaaagattgaataaaattggcaatattcaagttcataataaatacctcatttaacaaacaaaa |
6721163 |
T |
|
| Q |
212 |
atattaccaaaaccaaaaggtgagttgcaaagatcatgtacaaatt |
257 |
Q |
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| T |
6721164 |
atattaccaaaaccaaaaggtgagttgcaaagatcatgtacaaatt |
6721209 |
T |
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