View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18056_low_27 (Length: 260)
Name: NF18056_low_27
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_27 |
 | |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0393 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 10086 - 9854
Alignment:
| Q |
18 |
agatgaagcagaagaatcttctccacccccttcttttccagaactcgagttacaagttaaggaatccgttaagtcgcttggtggtgcagtcttttccaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
10086 |
agatgaagcagaagaatcttctccacccccttcttttccagaactcgagttacaagttaaggaatccgttaagttgcttggtggtgcagtctttcccaaa |
9987 |
T |
|
| Q |
118 |
ttgaattggagctccccaaaagattcagcttggataagtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9986 |
ttgaattggagctccccaaaagattcagcttggataagtacttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccg |
9887 |
T |
|
| Q |
218 |
actcattagtccacgacttgtgtcatgcctatg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
9886 |
actcattagtccacgacttgtgtcatgcttatg |
9854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 2407529 - 2407297
Alignment:
| Q |
18 |
agatgaagcagaagaatcttctccacccccttcttttccagaactcgagttacaagttaaggaatccgttaagtcgcttggtggtgcagtcttttccaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
2407529 |
agatgaagcagaagaatcttctccacccccttcttttccagaactcgagttgcaagttaaggaatccgttgagtcacttggtggtgcagtctttcccaaa |
2407430 |
T |
|
| Q |
118 |
ttgaattggagctccccaaaagattcagcttggataagtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2407429 |
ttgaattggagctccccaaaagattcagcttggataagtacttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccg |
2407330 |
T |
|
| Q |
218 |
actcattagtccacgacttgtgtcatgcctatg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
2407329 |
actcattagtccacgacttgtgtcatgcttatg |
2407297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 21478390 - 21478243
Alignment:
| Q |
108 |
cttttccaaattgaattggagctccccaaaagattcagcttggataagtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttc |
207 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||||||| | ||| | |||| ||| ||| ||||| |
|
|
| T |
21478390 |
ctttcccaaactgaattggagtgccccaaaggattcagcttggataagtacttctggtacccttcgctgcaccaatttaaatgaggttgtgcttttgttc |
21478291 |
T |
|
| Q |
208 |
cgatcatccgactcattagtccacgacttgtgtcatgcctatgcttct |
255 |
Q |
| |
|
||| ||||||||||||||||||| |||||||| ||||| |||| |||| |
|
|
| T |
21478290 |
cgagcatccgactcattagtccatgacttgtgccatgcttatgattct |
21478243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 30598090 - 30598018
Alignment:
| Q |
167 |
ctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtg |
239 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
30598090 |
ctcttggctgcaccactttcagtgagattgcacttcttttccaagcatccaactcattagtccatgacttgtg |
30598018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University