View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_38 (Length: 224)
Name: NF18056_low_38
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 28589444 - 28589241
Alignment:
| Q |
1 |
actttatttatagtttttaaatagtgtctgaaaatacttgctaacatttttcttctttttctttnnnnnnnnnnnnncatttttcttcttaaaattagct |
100 |
Q |
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| T |
28589444 |
actttatttatggtttttaaatagtgtctgaagatacttgctaacatttttcttctttctccttaaaaaaatag---catttttcttcttaaaattaact |
28589348 |
T |
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| Q |
101 |
tttggaatgagattcaaatctatttcacaacaaaacctgcgtaaaatgcttcgacacattagtgccaaccccatttaaccagtcaaacatcctagaaaga |
200 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
28589347 |
tttggaatgagattcgaatctatttcacaacaaaacttgcgtgaaatgcttggacacattagtgccaaccccatttaaccagttaaacatcccagaaaga |
28589248 |
T |
|
| Q |
201 |
atattca |
207 |
Q |
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||||||| |
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| T |
28589247 |
atattca |
28589241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 28584448 - 28584245
Alignment:
| Q |
1 |
actttatttatagtttttaaatagtgtctgaaaatacttgctaacatttttcttctttttctttnnnnnnnnnnnnncatttttcttcttaaaattagct |
100 |
Q |
| |
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||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||| |||||||| |||||||| |
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| T |
28584448 |
actttatttatggtttttaaatagtatctgaagatacttgctaacatttttcttctttttccttaagaaaaaaaaa-catttgtcttcttacaattagct |
28584350 |
T |
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| Q |
101 |
ttt-ggaatgagattcaaatctatttcacaacaaaacctgcgtaaaatgcttcgacacattagtgccaaccccatttaaccagtcaaacatcctagaaag |
199 |
Q |
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||| |||||||||||||||||||||| |||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
28584349 |
ttttggaatgagattcaaatctattttacaa---aatttgcgtacgatgcttggacacattagtgccaaccccatttaaccagtcaaacaccccagaaag |
28584253 |
T |
|
| Q |
200 |
aatattca |
207 |
Q |
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|||||||| |
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| T |
28584252 |
aatattca |
28584245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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