View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18056_low_4 (Length: 665)

Name: NF18056_low_4
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18056_low_4
NF18056_low_4
[»] chr7 (10 HSPs)
chr7 (18-450)||(5375341-5375751)
chr7 (448-653)||(5374645-5374850)
chr7 (72-224)||(5369285-5369437)
chr7 (447-609)||(5392916-5393078)
chr7 (360-401)||(5370346-5370387)
chr7 (236-340)||(5369649-5369747)
chr7 (448-487)||(5354617-5354656)
chr7 (232-274)||(1431945-1431987)
chr7 (576-630)||(5354681-5354735)
chr7 (229-274)||(20553179-20553224)
[»] chr8 (6 HSPs)
chr8 (232-274)||(24326107-24326149)
chr8 (232-274)||(30191093-30191135)
chr8 (229-274)||(7918730-7918775)
chr8 (231-259)||(31751504-31751532)
chr8 (229-261)||(31884889-31884921)
chr8 (229-277)||(42215039-42215087)
[»] chr3 (3 HSPs)
chr3 (229-302)||(42530307-42530381)
chr3 (230-274)||(37273210-37273254)
chr3 (229-268)||(45590733-45590772)
[»] chr6 (3 HSPs)
chr6 (233-274)||(2732200-2732241)
chr6 (229-274)||(2460100-2460145)
chr6 (229-274)||(32917273-32917318)
[»] chr1 (3 HSPs)
chr1 (233-274)||(32515394-32515435)
chr1 (228-268)||(49282547-49282587)
chr1 (229-261)||(14737675-14737707)
[»] chr2 (3 HSPs)
chr2 (233-280)||(22878168-22878215)
chr2 (234-274)||(5759529-5759569)
chr2 (234-274)||(29429711-29429751)
[»] chr5 (1 HSPs)
chr5 (229-274)||(32172729-32172774)
[»] chr4 (1 HSPs)
chr4 (229-274)||(27123301-27123346)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 5375751 - 5375341
Alignment:
Q  18 agtgccaactgcactgagatgataactgatataactaaagcaataagagttgaagatgttatgagcactggcattccaaactcgaactattccatcatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375751 agtgccaactgcactgagatgataactgatataactaaagcaataagagttgaagatgttatgagcactggcattccaaactcgaactattccatcatca 5375652  T
Q  118 gatccagatattaaaaagttctcggcggcactatatgctaagaaagtaactgacctgctgttagaatgagaaagttaattagttaaattacactacacag 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375651 gatccagatattaaaaagttctcagcggcactatatgctaagaaagtaactgacctgctgttagaatgagaaagttaattagttaaattacactacacag 5375552  T
Q  218 cttgaattaatctagcataagcacttgtgagactgtttgggaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcat 317  Q
    |||||||||||||                    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375551 cttgaattaatct--------------------tgtttgagaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcat 5375472  T
Q  318 aaaagccctctgggatagcttatttaatatagccctctgggatatatttctttgtagcattccattagataaggtccataccttnnnnnnngaaaacata 417  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  5375471 --aagccctctgggatagcttatttaatatagccgtctgggatatatttctttgtagcattccattagataaggtccataccttaaaaaaagaaaacata 5375374  T
Q  418 agaagtcagaaacaagaactgtgaattggaaaa 450  Q
    |||||||||||||||||||||||||||||||||    
T  5375373 agaagtcagaaacaagaactgtgaattggaaaa 5375341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 448 - 653
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
Q  448 aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374850 aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa 5374751  T
Q  548 caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374750 caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga 5374651  T
Q  648 gaccta 653  Q
    | ||||    
T  5374650 ggccta 5374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 5369285 - 5369437
Alignment:
Q  72 gatgttatgagcactggcattccaaactcgaactattccatcatcagatccagatattaaaaagttctcggcggcactatatgctaagaaagtaactgac 171  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |    
T  5369285 gatgttatgagtactggcattccaaactcgaacaattccatcatcagatccagatattaaaaaattctcggcggcactatatgctaagcaagtaactgcc 5369384  T
Q  172 ctgctgttagaatgagaaagttaattagttaaattacactacacagcttgaat 224  Q
     |||||| |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  5369385 ttgctgtaagaatgagaaagttaaatagttaaatgacattacacagcttgaat 5369437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 447 - 609
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
Q  447 aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag 545  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||  |||||||     
T  5393078 aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat 5392979  T
Q  546 aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct 609  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  5392978 aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct 5392916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 5370346 - 5370387
Alignment:
Q  360 tatatttctttgtagcattccattagataaggtccatacctt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5370346 tatatttctttgtagcattccattagataaggtccatacctt 5370387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 5369649 - 5369747
Alignment:
Q  236 aagcacttgtgagactgtttgggaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataaaagccctctgggatag 335  Q
    ||||||||||||||||||| | |||||| |||||||||||   ||  |||||||||||||||||||| ||| ||||||||||||    ||||||||||||    
T  5369649 aagcacttgtgagactgtt-gagaaagcttatggaaacacccaat--gacatctccatgagctgttttcagctttatttcataa---gcctctgggatag 5369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
Q  448 aaagattttgctttatcaatttcattttgactatctactc 487  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  5354617 aaagattttgctttatcaatttcattttgacaatctactc 5354656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 1431945 - 1431987
Alignment:
Q  232 gcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||    
T  1431945 gcataagcacttgtgagactgtttaggagagcttatggaaaca 1431987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
Q  576 aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa 630  Q
    ||||||||||||||||||||||||||  ||| |||||| |||| ||||| |||||    
T  5354681 aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa 5354735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 20553224 - 20553179
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||||||||||||||||||||||||  ||| ||| ||||||||||    
T  20553224 ctagcataagcacttgtgagactgttcaggagagcttatggaaaca 20553179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 24326149 - 24326107
Alignment:
Q  232 gcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  24326149 gcataagcacttgtgagactgtttgggagagcttatggaaaca 24326107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 30191093 - 30191135
Alignment:
Q  232 gcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||    
T  30191093 gcataagcacttgttagactgtttgggagagcttatggaaaca 30191135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 7918730 - 7918775
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||||||| ||||||||||||||||||||| ||| |||| |||||    
T  7918730 ctagcataaacacttgtgagactgtttgggagagcttatgaaaaca 7918775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 31751504 - 31751532
Alignment:
Q  231 agcataagcacttgtgagactgtttggga 259  Q
    |||||||||||||||||||||||||||||    
T  31751504 agcataagcacttgtgagactgtttggga 31751532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 31884889 - 31884921
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaa 261  Q
    ||||||||||||||||||||| |||||||||||    
T  31884889 ctagcataagcacttgtgagagtgtttgggaaa 31884921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 42215039 - 42215087
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaacacat 277  Q
    ||||||||||||||||||| ||||||||||| | | |||| ||||||||    
T  42215039 ctagcataagcacttgtgacactgtttgggagaacttatgaaaacacat 42215087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 42530381 - 42530307
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaacacatta-tatgacatctccatgagctgttt 302  Q
    |||||||||||||||||||||||||||  |||||| |||||||| |  ||| |||||||| ||||| ||||||||    
T  42530381 ctagcataagcacttgtgagactgtttcagaaagcttatggaaatagcttattatgacatgtccataagctgttt 42530307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 37273254 - 37273210
Alignment:
Q  230 tagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||    
T  37273254 tagcataagcactggtgagactgtttgggagagcttatggaaaca 37273210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 45590772 - 45590733
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatg 268  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  45590772 ctagcataagcacttgtgagactgtttgggagagcttatg 45590733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 2732200 - 2732241
Alignment:
Q  233 cataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  2732200 cataagcacttgtgagactgtttggaaaagcttatggaaaca 2732241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 2460100 - 2460145
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||||    
T  2460100 ctagcataagtacttgtgagactgtttgagagagcttatggaaaca 2460145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 32917318 - 32917273
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  32917318 ctagaataaacacttgtgagactgtttgggagagcttatggaaaca 32917273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 32515394 - 32515435
Alignment:
Q  233 cataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  32515394 cataagcacttgtgagactgtttgggagagcttatggaaaca 32515435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 49282547 - 49282587
Alignment:
Q  228 tctagcataagcacttgtgagactgtttgggaaagcgtatg 268  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  49282547 tctagcataagcacttatgagactgtttgggaaagcttatg 49282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 14737675 - 14737707
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaa 261  Q
    |||| ||||||||||||||||||||||||||||    
T  14737675 ctagaataagcacttgtgagactgtttgggaaa 14737707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 22878215 - 22878168
Alignment:
Q  233 cataagcacttgtgagactgtttgggaaagcgtatggaaacacattat 280  Q
    ||||||||||||||||||||||||||| | | |||||||||| |||||    
T  22878215 cataagcacttgtgagactgtttgggagaccttatggaaacaaattat 22878168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 5759529 - 5759569
Alignment:
Q  234 ataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    ||||| |||||||||||||||||||| ||| ||||||||||    
T  5759529 ataagtacttgtgagactgtttgggagagcttatggaaaca 5759569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 29429711 - 29429751
Alignment:
Q  234 ataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  29429711 ataagcacttgtgagactgtttgggagagcttatagaaaca 29429751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 32172774 - 32172729
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||||||||||||||  |||||||| ||| ||||||||||    
T  32172774 ctagcataagcacttgtgagatagtttgggagagcttatggaaaca 32172729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 27123301 - 27123346
Alignment:
Q  229 ctagcataagcacttgtgagactgtttgggaaagcgtatggaaaca 274  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||||    
T  27123301 ctagcataagtacttgtgagactgtttgagagagcttatggaaaca 27123346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University