View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_6 (Length: 503)
Name: NF18056_low_6
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 38115243 - 38115530
Alignment:
| Q |
17 |
cactaacgtccaataaaacttgaatatttatttcccaatatgcagtttcactgtcacaagaaaacgcgcgcatttcaaattgtgattgggaaaataaatc |
116 |
Q |
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| T |
38115243 |
cactaacgtccaataaaacttgaatatt----tcccaatatgcagtttcactgtcacaagaaaacgcgcgcatttcaaattgtgattgggaaaataaagc |
38115338 |
T |
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| Q |
117 |
aatatattcaaaactcattcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaaatatcagaaaat |
216 |
Q |
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| T |
38115339 |
aatatattcaaaactcattcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaaatatcagaaaat |
38115438 |
T |
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| Q |
217 |
ctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaattcatg |
308 |
Q |
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| T |
38115439 |
ctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaattcatg |
38115530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 299 - 488
Target Start/End: Original strand, 38115551 - 38115735
Alignment:
| Q |
299 |
ttaattcatgttttgatgattaacgaagcttatttctcaatcaattcatcatctatatgatataaccattctgtttcatttctatttggtttttgcattg |
398 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38115551 |
ttaattaatgttttgatgattaacgaagcttatttctcaatcaattcatcatctatatgatataagcattctgtttcatttctatttggtttttgcattg |
38115650 |
T |
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| Q |
399 |
gaattaagttctgattctgttcaatttgttgcgttgcagttgtatcatcaataattttatcttatcttttcttttttcgaatcttcagat |
488 |
Q |
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| T |
38115651 |
gaattaagttctgattctgttcaattt-----gttgcagttgtatcatcaataattttatcttatcttttcttttttcgaatcttcagat |
38115735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 38159464 - 38159523
Alignment:
| Q |
207 |
atcagaaaatctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcat |
266 |
Q |
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| T |
38159464 |
atcaaaaaacctaactggtaaattcatctcaaccgtttttcgtcttcttcgctcttgcat |
38159523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 49003231 - 49003409
Alignment:
| Q |
133 |
attcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaaat-------atcagaaaatctaaccggt |
225 |
Q |
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||||||| |||||| |||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||||||| ||||||||| |
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| T |
49003231 |
attcagatttggaaaatttagagatcgctctttcactctgctacaatccttttcttctctcacaacttggagactccaacaatcagaaaacctaaccggt |
49003330 |
T |
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| Q |
226 |
aaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaattcat |
307 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
49003331 |
aaattcatctcaaccgtttttcatcttcttcgctcttgcattcataat---ttgaatccatctcaatatctgattaattcat |
49003409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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