View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_7 (Length: 441)
Name: NF18056_low_7
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 10676024 - 10676453
Alignment:
| Q |
1 |
aacttttatctattgtagtagctaaacacagattttcttgaagtacatcttagagaattacttatcaacatacataaaaaatactaataaaaaagacaac |
100 |
Q |
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| T |
10676024 |
aacttttatttattgtagtagctaaacacagattttcttgaagtacatcttagagaattacttatcaacatacataaaaa-tactaataaaaaagacaac |
10676122 |
T |
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| Q |
101 |
ccgtaaaatcataacaccattccttcctttactattgcacaatgcacatgcatgtttccacaagccaacttcttgagacttaatttcatatatatagcga |
200 |
Q |
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| T |
10676123 |
ccgtaaaatcataacaccattacttcctttactattgcacaatgcacatgcatgtttccacaagccaacttcttgagacttaatttcatatatatagcga |
10676222 |
T |
|
| Q |
201 |
acccatatatataggtcttgtgttaacagaaaacttacgcaaatttacggcaatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaaca |
300 |
Q |
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| T |
10676223 |
acccatat--ataggtcttgtgttaacagaaaacttacgcaaatttatggcaatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaaca |
10676320 |
T |
|
| Q |
301 |
atcactatggtttgttgttgtattcaagagctatgggaatggaacttatttgcggagaagctaatggagcaaagcaatggaagatgctttgcttatgtag |
400 |
Q |
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| T |
10676321 |
atcactatggtttgttgttgtattcaagagctatgggaatggaacttatttgtggagaagctaatggagcaaagcaatggaagatgctttgcttatgtag |
10676420 |
T |
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| Q |
401 |
aactcttaaatctcaatggattaactatatata |
433 |
Q |
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| T |
10676421 |
aactcttaaatctcaatggattaactatatata |
10676453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 10672673 - 10672793
Alignment:
| Q |
265 |
taaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaagagctatgggaatggaac---ttatttgcggagaagc |
361 |
Q |
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| T |
10672673 |
taaatttggggtagatatcatgtccaacaaaaaa-aatcactgt--tttgttgttatattcaagagctatgggaatggagcctattatttgtgaacaagc |
10672769 |
T |
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| Q |
362 |
taatggagcaaagcaatggaagat |
385 |
Q |
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| T |
10672770 |
taatggagcaaagcaatggaagat |
10672793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 28506375 - 28506313
Alignment:
| Q |
333 |
atgggaatggaacttatttgcggagaagctaatggagcaaagcaatggaagatgctttgctta |
395 |
Q |
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| T |
28506375 |
atgggaatggaaccaatttgtggacaagcttatggagcaaaacaatggaagatacttggctta |
28506313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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