View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_8 (Length: 426)
Name: NF18056_low_8
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 43620666 - 43621060
Alignment:
| Q |
11 |
catcatcaacaaggctatgattgtggtcattgttaaaatcccatacataccaacatcgactaccagaaccaatgtgcacaatacatttggcatcacatcc |
110 |
Q |
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| T |
43620666 |
catcatcgacaaggctatgattgtggtcattgttaaaatcccatacataccaacatcgactaccagaatcaatgtgcacactacatttggcatcacatcc |
43620765 |
T |
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| Q |
111 |
gcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagcnnnnnnnctctgaaaccttgtctatatagcaaacaaatatttgttata |
210 |
Q |
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| T |
43620766 |
gcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagctttttttctctgaaaccttgtctgta--gcaaacaaatatttgttgta |
43620863 |
T |
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| Q |
211 |
taatctcgttgtttttgtttcttcttactttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgtataagccactacaatatt |
310 |
Q |
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| T |
43620864 |
taatctcgttgtttttgtttctccttacttttcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgcataagccactgcaatatt |
43620963 |
T |
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| Q |
311 |
tgaaaaatgaaacttcgtaacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattcattgaatagcaaatccaaatccaact |
407 |
Q |
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| T |
43620964 |
tggaaaatgaaacttcataacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattccttgaatagcaaatccaaatccaact |
43621060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 103 - 407
Target Start/End: Complemental strand, 16360845 - 16360543
Alignment:
| Q |
103 |
tcacatccgcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagcnnnnnnnctctgaaaccttgtctatatagcaaacaaatat |
202 |
Q |
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| T |
16360845 |
tcacatccgcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagctttttttctctaaaaccttgtctgta--gcaaacaaatat |
16360748 |
T |
|
| Q |
203 |
ttgttatataatctcgttgtttttgtttcttcttactttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgtataagccact |
302 |
Q |
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| T |
16360747 |
ttgttgtataatctcgttgtttttgtttctccttactttgcttctacgagcagaaaaaccattcattcgagcataccaattataaaatgtataagccact |
16360648 |
T |
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| Q |
303 |
acaatatttgaaaaatgaaacttcgtaacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattcattgaatagcaaatccaaatc |
402 |
Q |
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| T |
16360647 |
gcaatatttggaaaatgaaacttcatcacatcacttgcatttaattttttaaaatcaattttccctatatcttccattccttcaatagcaaatccaaatc |
16360548 |
T |
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| Q |
403 |
caact |
407 |
Q |
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||||| |
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| T |
16360547 |
caact |
16360543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 21138216 - 21138269
Alignment:
| Q |
240 |
ttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgta |
293 |
Q |
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|||||| |||| |||||||| |||| ||||| ||||||||||||||| |||||| |
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| T |
21138216 |
ttgcttttacgggcagaaaatccatgcattctagcataccaattgtagaatgta |
21138269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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