View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18056_low_9 (Length: 420)
Name: NF18056_low_9
Description: NF18056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18056_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 87 - 406
Target Start/End: Complemental strand, 45695733 - 45695421
Alignment:
| Q |
87 |
atatatatagacagacttgtatttatagcgagaccatttagtatggccggtcccgcaacaatgaaattgattcagccatgttatataattacacaattac |
186 |
Q |
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| T |
45695733 |
atatatatatatagacttgtatttatagcgagaccatttagtatggccggtccagcaacaatgtaattgagtcagacatgttacataattacacaattac |
45695634 |
T |
|
| Q |
187 |
aatgcaggtagtgagtcatcaaccatcatatgcctataggctatatcgatgatatactatatctataggcttcctacaagctgtttttgtgttttgaata |
286 |
Q |
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| T |
45695633 |
aatgcaggtagtgagtcatcaaccatcatatgcctata-------tcgatgatatactatatctataggcttcctacaagctgtttttgggttttgaata |
45695541 |
T |
|
| Q |
287 |
aagaaaagtggtacaatactacaaatgtacgtaattatctttttctgctactattcatttataggacgaatcatccaagacggaagaatggcaccacctc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45695540 |
aagaaaagtggtacaatactacaaatgtacgtaattatctttttctgctactattcatttataggacgaatcatccaagacggaagaatggcaccacctc |
45695441 |
T |
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| Q |
387 |
ttgtttgtgctgctgtttct |
406 |
Q |
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|||||||||||||||||||| |
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| T |
45695440 |
ttgtttgtgctgctgtttct |
45695421 |
T |
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