View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18057_high_2 (Length: 462)
Name: NF18057_high_2
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 32911422 - 32911037
Alignment:
| Q |
16 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgcaataatattatcatgcaaattatgttacaaattatttaatc |
115 |
Q |
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| T |
32911422 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgcaataatattatcatgcaaattatgttacaaattatttaatc |
32911323 |
T |
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| Q |
116 |
cttttacatattgaaacaattaaaagtgataataaattcgatttattttttatcagagtaattgatattttctgtaactaattatataaacatagaccnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32911322 |
cttttacatattgaaacaattaaaagtgataataaatttgatttattttttatcagagtaattgatattttctgtcactaattatataaacatagaccaa |
32911223 |
T |
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| Q |
216 |
nnnnnnnnnntatgttgttacacatttcattcatttatttccgggtggaaaaattcttgatcattctagccggaacatcagattagcagggcccattttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911222 |
aaataaaaaatatgttgttacacatttcattcatttatttccgggtggaacaattcttgatcattctagccggaacatcagattagcagggcccattttt |
32911123 |
T |
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| Q |
316 |
cttgagaagcgagggttaacatac-nnnnnnnnntcgcacatttgcatagtcaacaaatcaatgattgttggaacaagatcagaca |
400 |
Q |
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|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32911122 |
cttgagaagcgagggttaacatacaaaaaaaaaattgcacatttgcgtagtcaacaaatcaatgattgttggaacaagatcagaca |
32911037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 32934136 - 32934077
Alignment:
| Q |
16 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
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|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32934136 |
cttgcaatatcttttcggcagcatccccattcaaaagcctcaaacctgcggttgcctgca |
32934077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 32923291 - 32923233
Alignment:
| Q |
17 |
ttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32923291 |
ttgcagtattttttcagaagcatccccattcaaaagccttaaacctgctgttgcctgca |
32923233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 11823504 - 11823445
Alignment:
| Q |
17 |
ttgcaatatcttttcagaagcatcccc-attcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
11823504 |
ttgcagtatcttttcagaagcatcccccattcaaaagccttaaacctgctgttgcctgca |
11823445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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