View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18057_high_4 (Length: 351)
Name: NF18057_high_4
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_high_4 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 31717740 - 31717919
Alignment:
| Q |
172 |
aaactgcgtgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaagt |
271 |
Q |
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| T |
31717740 |
aaactgcgtgacagatttgtattgttggagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaagt |
31717839 |
T |
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| Q |
272 |
gttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataaggcatcagatgaga |
351 |
Q |
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| T |
31717840 |
gttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtgaaggataaagataaggcatcagatgaga |
31717919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 31717896 - 31717721
Alignment:
| Q |
1 |
tccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
100 |
Q |
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| T |
31717896 |
tccttcactgcgatccggagcaaagcgagctccggatcactcaaacgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
31717797 |
T |
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| Q |
101 |
ttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaact |
176 |
Q |
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| T |
31717796 |
ttttcttcttaacacaatcagctcccactccaacaatacaaatctgtcacgcagttttatataatataatcaaact |
31717721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 346
Target Start/End: Original strand, 31654168 - 31654334
Alignment:
| Q |
180 |
tgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaagtgttcaaat |
279 |
Q |
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| T |
31654168 |
tgacaggtttgtattgctggagtgggagctgatagtgtgaagatgaaaacaagtgtaaagatggacaattggtatcctgtttgggacgaagagttcgaat |
31654267 |
T |
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| Q |
280 |
cccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataaggcatcaga |
346 |
Q |
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| T |
31654268 |
tccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataagggatcaga |
31654334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 31654313 - 31654168
Alignment:
| Q |
4 |
ttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttt |
103 |
Q |
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| T |
31654313 |
ttcacttcgatccggagcaatgcaagctctggaacagtcaattggaattcgaactcttcgtcccaaacaggataccaattgtccatctttacacttgttt |
31654214 |
T |
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| Q |
104 |
tcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
149 |
Q |
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| T |
31654213 |
tcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 335
Target Start/End: Original strand, 31704535 - 31704691
Alignment:
| Q |
179 |
gtgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaagtgttcaaa |
278 |
Q |
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| T |
31704535 |
gtgacaggtttctattgctggagtgagagctgattgtgccaagaagaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgag |
31704634 |
T |
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| Q |
279 |
tcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagat |
335 |
Q |
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| T |
31704635 |
ttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagat |
31704691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31704684 - 31704522
Alignment:
| Q |
1 |
tccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
100 |
Q |
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||||| ||| ||| ||||||||| || ||||||||| | ||||| || | | ||| ||||||||||||| |||| ||| |||||| ||| ||| |||| |
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| T |
31704684 |
tcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatctttacacttg |
31704585 |
T |
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| Q |
101 |
ttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatata |
163 |
Q |
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| T |
31704584 |
ttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtata |
31704522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 44901426 - 44901503
Alignment:
| Q |
97 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaact |
176 |
Q |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaact |
44901503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 44901477 - 44901426
Alignment:
| Q |
179 |
gtgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaag |
232 |
Q |
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| T |
44901477 |
gtgacaggtttgtattgttggagtgggagctgactgtg--aagaagaaaacaag |
44901426 |
T |
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