View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18057_low_1 (Length: 739)
Name: NF18057_low_1
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 19 - 722
Target Start/End: Original strand, 31717891 - 31718593
Alignment:
| Q |
19 |
gaagaataaagataaggcatcagatgagacaagaattttggtttgttgctttgtgcgacagaaagggaaagaaatataattc----tgtcaagcttttgc |
114 |
Q |
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| T |
31717891 |
gaaggataaagataaggcatcagatgagacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataattaattatgtcaagcttttgc |
31717990 |
T |
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| Q |
115 |
ttcttttccaacttgaatcttcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatct-tatctaaaaggtc |
213 |
Q |
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| T |
31717991 |
ttcttttccaacttgaatattcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatctgtatctaaaaggtc |
31718090 |
T |
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| Q |
214 |
attgcaagatgaagaagcttgggggaaaagaagttcttagtttgagaggtgat-ccaaggtctgatactaactcaatggtgtttattataaattgcaatg |
312 |
Q |
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| T |
31718091 |
attgcaagatgaagaaacttgggggaaaagaagtttttagtttgagaggtgattccaaggtctgatactaactcaatggtgtttattataaattgcaatg |
31718190 |
T |
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| Q |
313 |
agtatattattggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaag |
412 |
Q |
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| T |
31718191 |
agtatatt---ggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaag |
31718287 |
T |
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| Q |
413 |
cgggaaattcgtgtcaagatgcatcagatgaatgccttaaaagtgaatcgatcgatttccatgtgcctagccaccctcagtatgatattgaacttcaata |
512 |
Q |
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| T |
31718288 |
cgggaaattcgtgtcaatatgcatcagatgaatgccttaagagtgaatcg----atttccatgtgcctagccacccccagtatgatattgaacttcaata |
31718383 |
T |
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| Q |
513 |
actctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatcaatacta |
612 |
Q |
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| T |
31718384 |
actctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatgaatacta |
31718483 |
T |
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| Q |
613 |
gacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatat |
712 |
Q |
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| T |
31718484 |
gacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcggtagaatat |
31718583 |
T |
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| Q |
713 |
gacgcgagtg |
722 |
Q |
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| T |
31718584 |
gatgcgagtg |
31718593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 31654383 - 31654479
Alignment:
| Q |
53 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagcttttgcttcttttccaacttgaatcttcaaatatattgtag |
149 |
Q |
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| T |
31654383 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagcttttacttggattccaccttgaaactttaaatatattgtag |
31654479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 31704751 - 31704810
Alignment:
| Q |
53 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagctttt |
112 |
Q |
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| T |
31704751 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagctttt |
31704810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 712
Target Start/End: Complemental strand, 31011383 - 31011309
Alignment:
| Q |
638 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatat |
712 |
Q |
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|||||||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
31011383 |
gatgtgttctttatttgcaaatgaaatgtgagttattgatcctctgattgttgacaggttcactcagcagaatat |
31011309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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