View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18057_low_2 (Length: 462)
Name: NF18057_low_2
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 32911422 - 32911037
Alignment:
| Q |
16 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgcaataatattatcatgcaaattatgttacaaattatttaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32911422 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgcaataatattatcatgcaaattatgttacaaattatttaatc |
32911323 |
T |
|
| Q |
116 |
cttttacatattgaaacaattaaaagtgataataaattcgatttattttttatcagagtaattgatattttctgtaactaattatataaacatagaccnn |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32911322 |
cttttacatattgaaacaattaaaagtgataataaatttgatttattttttatcagagtaattgatattttctgtcactaattatataaacatagaccaa |
32911223 |
T |
|
| Q |
216 |
nnnnnnnnnntatgttgttacacatttcattcatttatttccgggtggaaaaattcttgatcattctagccggaacatcagattagcagggcccattttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32911222 |
aaataaaaaatatgttgttacacatttcattcatttatttccgggtggaacaattcttgatcattctagccggaacatcagattagcagggcccattttt |
32911123 |
T |
|
| Q |
316 |
cttgagaagcgagggttaacatac-nnnnnnnnntcgcacatttgcatagtcaacaaatcaatgattgttggaacaagatcagaca |
400 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32911122 |
cttgagaagcgagggttaacatacaaaaaaaaaattgcacatttgcgtagtcaacaaatcaatgattgttggaacaagatcagaca |
32911037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 32934136 - 32934077
Alignment:
| Q |
16 |
cttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32934136 |
cttgcaatatcttttcggcagcatccccattcaaaagcctcaaacctgcggttgcctgca |
32934077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 32923291 - 32923233
Alignment:
| Q |
17 |
ttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32923291 |
ttgcagtattttttcagaagcatccccattcaaaagccttaaacctgctgttgcctgca |
32923233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 11823504 - 11823445
Alignment:
| Q |
17 |
ttgcaatatcttttcagaagcatcccc-attcaaaagccttaaacctgcggttgcctgca |
75 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
11823504 |
ttgcagtatcttttcagaagcatcccccattcaaaagccttaaacctgctgttgcctgca |
11823445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University