View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18057_low_3 (Length: 390)
Name: NF18057_low_3
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1560634 - 1561008
Alignment:
| Q |
1 |
actcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaag |
100 |
Q |
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| T |
1560634 |
actcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaag |
1560733 |
T |
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| Q |
101 |
cgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttgtccagttatggtacca |
200 |
Q |
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| T |
1560734 |
cgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttgtccagttatggtacca |
1560833 |
T |
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| Q |
201 |
aaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatattcatccaaaattaatgcttga |
300 |
Q |
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| T |
1560834 |
aaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatattcatccaaaattaatgcttga |
1560933 |
T |
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| Q |
301 |
tctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaaaacac--agaacacacaacc |
373 |
Q |
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| T |
1560934 |
tctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaaaacacagagaacacacaacc |
1561008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 2091117 - 2091308
Alignment:
| Q |
85 |
atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttg |
184 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2091117 |
atttgtttctcaaaagcgacaaagatttcttatctttaataagaatttgagaaaatgctaatgatggttcaaggtactttctttgacagccaacaatgtg |
2091216 |
T |
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| Q |
185 |
tccagttatggtaccaaaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaa |
276 |
Q |
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| T |
2091217 |
tccagttatggtaccgaaagtcggtaactctataccgcaattaggagcgaaaacttcaacgaaatcatcttcgggaggtttgcagttgacaa |
2091308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2090593 - 2090680
Alignment:
| Q |
1 |
actcgtgcaaatgtacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaattt |
88 |
Q |
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| T |
2090593 |
actcgtgcaaatgtacatgtatcatttacaatttaatacataaatatgttgacactcaagataaaaatgaaccttcctagtcaaattt |
2090680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 2091400 - 2091476
Alignment:
| Q |
297 |
ttgatctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaaaacacagaacacacaacc |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
2091400 |
ttgatctgttctattcttgttcaaaatgtcgacaatttcggttgcagggtttcctgtaagacacagaacacacaacc |
2091476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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