View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18057_low_4 (Length: 384)
Name: NF18057_low_4
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 31717896 - 31717527
Alignment:
| Q |
1 |
tccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
100 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717896 |
tccttcactgcgatccggagcaaagcgagctccggatcactcaaacgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
31717797 |
T |
|
| Q |
101 |
ttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717796 |
ttttcttcttaacacaatcagctcccactccaacaatacaaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagc |
31717697 |
T |
|
| Q |
201 |
caaacgaatttagaaaatgatggacaagaattatcgaactgagtatttcaacaataaaattaagttgttcaacatgaaaatattcattcatgccatgaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717696 |
caaacgaatttagaaaatgatggacaagaattatcgaactgagtatttcaataataaaattaagttgttcaacatgaaaatattcattcatgccatgaaa |
31717597 |
T |
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| Q |
301 |
ctacttaatttccttttagtaaaatgattaagagcacactacactcac----ttctaatatttccttcac |
366 |
Q |
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| T |
31717596 |
ctacttaatttccttttagtaaaatgattaagagcacactacactcacttaattctaatatttccttcac |
31717527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 31654313 - 31654168
Alignment:
| Q |
4 |
ttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttt |
103 |
Q |
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| T |
31654313 |
ttcacttcgatccggagcaatgcaagctctggaacagtcaattggaattcgaactcttcgtcccaaacaggataccaattgtccatctttacacttgttt |
31654214 |
T |
|
| Q |
104 |
tcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
149 |
Q |
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| T |
31654213 |
tcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31704684 - 31704522
Alignment:
| Q |
1 |
tccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttg |
100 |
Q |
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||||| ||| ||| ||||||||| || ||||||||| | ||||| || | | ||| ||||||||||||| |||| ||| |||||| ||| ||| |||| |
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| T |
31704684 |
tcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatctttacacttg |
31704585 |
T |
|
| Q |
101 |
ttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatata |
163 |
Q |
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|||||||||| |||||||||||| ||||| | ||||| ||| ||||||| |||||| |||| |
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| T |
31704584 |
ttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtata |
31704522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 53918985 - 53919014
Alignment:
| Q |
303 |
acttaatttccttttagtaaaatgattaag |
332 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53918985 |
acttaatttccttttagtaaaatgattaag |
53919014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 44901426 - 44901563
Alignment:
| Q |
97 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatga |
195 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| || |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacagga |
44901523 |
T |
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| Q |
196 |
tcagccaaacgaatttagaaaatg-atggacaagaattat |
234 |
Q |
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||||||||| |||||||||||| |||||||||||||| |
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| T |
44901524 |
tcagccaaatagatttagaaaatgtgtggacaagaattat |
44901563 |
T |
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