View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18057_low_5 (Length: 368)
Name: NF18057_low_5
Description: NF18057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18057_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 32777426 - 32777076
Alignment:
| Q |
1 |
attttatcaagagaatgtatggaaccacatccaaccactctaaacgcgtatacatgagttttcaccgtgatttttagaagctagggtttagatttacaat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
32777426 |
attttatcaagagaatgtttggaaccacgtccaacaactccaaacatgtatacatgagttttcaccgtgatttttaaaagctagaatttagatttacaat |
32777327 |
T |
|
| Q |
101 |
acagttgagcgttagttgtagatcattagatt--aagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaaagttgaatatagag |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
|
|
| T |
32777326 |
acagttgagcgttagtcgtagatcattagattaaaagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaaagttataaat-gtt |
32777228 |
T |
|
| Q |
199 |
aatctatttttaaatgctgtgtttatttta-nnnnnnnctgtctaaattatcaaaatatcttcttgcaatttgaatatacaaatggattaaaacattttt |
297 |
Q |
| |
|
| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32777227 |
actgatttttaaaatgctgtgtttattttattttttttctgtctaaattatcaaaatatcttcttgcaatttgaatatacaaatggattaaaaca-tttt |
32777129 |
T |
|
| Q |
298 |
ctggataggnnnnnnnncgtgtgtggcttctattgatcattggttctgcaatc |
350 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32777128 |
ctggataggttttttttcgtgtgtggcttctattgatcattggttctgcaatc |
32777076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University