View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_11 (Length: 401)
Name: NF18058_high_11
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 36105107 - 36104735
Alignment:
| Q |
11 |
ggagcagagacggcgggagaagcggaggtcggaggggaggatgcgacgagaaggggattcggattggatccggtgaatggctgaccagcgtgggtcggag |
110 |
Q |
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| T |
36105107 |
ggagccgagacggtgggagaagcggaggtcggaggggaggatgcgacgagaaggggattcggattggatccggtgaatggctgaccagcgtgggtcggag |
36105008 |
T |
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| Q |
111 |
gaaggagcgtgatgtttggtggtggttggaggaggaggaggaaatggaagggatcgaccggagagatgagcagaggttgaggatgaactgaagcttgtac |
210 |
Q |
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| T |
36105007 |
gaaggagcgtgatgtttggtggtggttggaggaggaggaggaaatggaagggatcgaccggagagatgagcggaggttgaggatgaactgaagcttgtac |
36104908 |
T |
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| Q |
211 |
tgcgtttgatgtcggcggtggtgacagtggtggttgttgtggaggcaaagcttaggctctggaggtcgtcggttagatcgtccagccacgggtccattgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36104907 |
tgcgtttgatgtcggcggtggtgacagtggtggttgttgtggaggcaaagcttaggctctggaggtcgtcggttagatcgtcgagccacgggtccattgt |
36104808 |
T |
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| Q |
311 |
gttggtgttgtgtccaactaagtatttctcggagttgagagattgnnnnnnnattttggtttgagtgtgttat |
383 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
36104807 |
gttggtgttttgtccaactaagtatttctcggagttgagagagtgtttttttattttgatttgagtgtgttat |
36104735 |
T |
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