View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_13 (Length: 388)
Name: NF18058_high_13
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 594692 - 594322
Alignment:
| Q |
17 |
agttgcaagccgctgaacagaagaggtgggttccatgcatcagtttttgctcttatgaagcactgacacggacattttgacactagtaaaatttgaaata |
116 |
Q |
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| T |
594692 |
agttgcaagccgctgaacagaagaggtgggttccatgcatcagtttt-gctcttatgaagcactgacacggacatgttgacactagtaaaatttgaaata |
594594 |
T |
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| Q |
117 |
atggattaatcgaatgtaatcacacatgttggtgtcggatactgacatgtgtaggacatgggacacactttccatcagaagtgtctggtgctacggttat |
216 |
Q |
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| T |
594593 |
atggattaatcgaatgtaattacacatgttggtgtcggatactgacatgtgtaggacatgggacacactttccatcagaagtgtctggtgctacggttat |
594494 |
T |
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| Q |
217 |
gcatctatttaaatataagcactaaatgcattttacatttatgtctgtacgtacaagtgctctaagtttgcatttgaattcttttaaagaaagtatcaaa |
316 |
Q |
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| T |
594493 |
gcatctatttaaatataagcactaaatgcattttacatttatgtctgtacgtacaagtgctctaagtttgcatttgaattcttttaaagaaagtatcaaa |
594394 |
T |
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| Q |
317 |
ttatgagataagttttagacctattttgggattcaaatgcacttttttctttggttaaagcataattaggga |
388 |
Q |
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| T |
594393 |
ttatgagataagttttagacctattttgggattcaaatgcacttttttctttggttaaaacataattaggga |
594322 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 19138861 - 19138815
Alignment:
| Q |
106 |
aatttgaaataatggattaatcgaatgtaatcacacatgttggtgtc |
152 |
Q |
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| T |
19138861 |
aatttgagagaatgaattaatcgaatgtaatcacatatgttggtgtc |
19138815 |
T |
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