View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_28 (Length: 271)
Name: NF18058_high_28
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 24123245 - 24123490
Alignment:
| Q |
13 |
tcatcattgatctcatcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagttctgagttcccatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24123245 |
tcatcattgatctcatcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagttctgaggtcccatc |
24123344 |
T |
|
| Q |
113 |
ttaaaaaacatatcagcagccttctcgcccagttcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctcaaaga |
212 |
Q |
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||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24123345 |
ttaaaaaccatctcagcagcctcctcgcccagttcagtatttccatatacccggcttgcaccaagcagagctccctatgaagcagcgcatggctcaaagg |
24123444 |
T |
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| Q |
213 |
catgtttctccttaagccctacgcttcatccaagcggtcaactctg |
258 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
24123445 |
catgtttctccttaagccctacgcttcatccaagcggccagctctg |
24123490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 45169916 - 45169685
Alignment:
| Q |
28 |
tcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagttctgagttcccatcttaaaaaacatatca |
127 |
Q |
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||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| | | |
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| T |
45169916 |
tcatctcatcagcatagacccgtctgcccaaagctgcatatagattgaaaagaggacatacattcctgagttctgaggtcccatcttaaaaaacatttga |
45169817 |
T |
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| Q |
128 |
gcagccttctcgcccagttcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctc-aaagacatgtttctcctta |
226 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||||| |
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| T |
45169816 |
gcagccttctcgcccagttcagtattgccatgaatccggcttgcaccaagcagagctccctacgaagcagcgcctggctcaaaaggcatgtttctcctta |
45169717 |
T |
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| Q |
227 |
agccctacgcttcatccaagcggtcaactctg |
258 |
Q |
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|| ||| |||||| |||||||||||||||||| |
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| T |
45169716 |
agtcctgcgcttcttccaagcggtcaactctg |
45169685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 45167091 - 45166920
Alignment:
| Q |
28 |
tcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaaga-ggacatacattcctgagttctgagttcccatcttaaaaaacatatc |
126 |
Q |
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|||||| |||||||| ||||||||||| || ||||||||| ||||| ||||| |||| |||||||| |||||||||| | |||||||||||| ||| || |
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| T |
45167091 |
tcatcttatcagcatcaacccatctgcccgaggctgcatatagatttgaaagaaggacgtacattcccgagttctgaggttccatcttaaaaaccatctc |
45166992 |
T |
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| Q |
127 |
agcagccttctcgcccagttcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagc |
198 |
Q |
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| T |
45166991 |
agcagccttctcgcccagttcagtattgccatgaatccggcttgcaccaagtagagctccccatgaagcagc |
45166920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 45153843 - 45153722
Alignment:
| Q |
108 |
ccatcttaaaaaacatatcagcagccttctcgcccagttcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctc |
207 |
Q |
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|||| ||||||| ||| |||||||||||||| || ||||||| ||| |||| |||||||||||||| | ||||||||| ||| ||||| |||||| |
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| T |
45153843 |
ccatattaaaaaccatctcagcagccttctcacctagttcagcattgccatgaatccggcttgcacctaatagagctccccatgttgcagcatctggctc |
45153744 |
T |
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| Q |
208 |
-aaagacatgtttctccttaag |
228 |
Q |
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|||| |||||||||| ||||| |
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| T |
45153743 |
aaaaggcatgtttctcattaag |
45153722 |
T |
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