View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_34 (Length: 249)
Name: NF18058_high_34
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 594282 - 594044
Alignment:
| Q |
1 |
ttttggtgttctagatggaaattgactgtcagtccttttctttatcattggacaattatgaatatttgataaaactaataacttttccatttatttatca |
100 |
Q |
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| T |
594282 |
ttttggtgttctagatggaaattgactgtcagtccttttctttatcattggacaattatgtttatttgataaaactaataacttttccatttatttatca |
594183 |
T |
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| Q |
101 |
gcttgtacaagttgtttgttttacatccttttgtttgagaagtttagataatgtttataaacttgatcacaaacttctgaaatttgatggtcaaatcaat |
200 |
Q |
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| T |
594182 |
gcttgtacaagttgtttgttttacatccttttgtttgagaagtttagataatgtttataaacttgatcacaaacttctgaaatttgatggtcaaatcaat |
594083 |
T |
|
| Q |
201 |
tgaaatacagtaatccaatcatagaaaaatttaattctt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
594082 |
tgaaatacagtaatccaatcatagaaaaatttaattctt |
594044 |
T |
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