View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_36 (Length: 239)
Name: NF18058_high_36
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 14431269 - 14431097
Alignment:
| Q |
14 |
gataccttgatcggcaaggttcatatccctctcaaggagcttcttgataacacctccggagattctttccggctggttaattatcaggttagaacgtctt |
113 |
Q |
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| T |
14431269 |
gataccttgatcggcaaggttcatatccctctcaaggagcttcttgataacccctccggagattctttccggcaggttaattatcaggttagaacatctt |
14431170 |
T |
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| Q |
114 |
cggggaaagctaaagggaacttaaacctctcttacaaattcggcgaaaaagtcaaagctctggggacgaaaac |
186 |
Q |
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| T |
14431169 |
cagggaaagctaaaggaaacttaaacctctcttacaaattcggcgaaaaagtccaagctccggcgatgaaaac |
14431097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 14431052 - 14431017
Alignment:
| Q |
186 |
cggtgatggcttatcctccacctggaatggcggcag |
221 |
Q |
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| T |
14431052 |
cggtgatggcttatcctccacctggaatggcggcag |
14431017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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