View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_high_40 (Length: 231)
Name: NF18058_high_40
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 31832709 - 31832628
Alignment:
| Q |
29 |
tgatccaccaatccaatcctacccatcaaatcctcagcttcagttttcattcagaagactctttcacatcaccccattaaaa |
110 |
Q |
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| T |
31832709 |
tgatccaccaatccaatcctacccatcaaatcctcagcttcagttttcattcagaagactctttcacatcaccccattaaaa |
31832628 |
T |
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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31832568 - 31832515
Alignment:
| Q |
170 |
aactacaacaatacttgaactacgtggtgtcaagaacaatgatggtgatgatga |
223 |
Q |
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| T |
31832568 |
aactacaacaatacttgaactacgtggtgtcaagaacaatgatggtgatgatga |
31832515 |
T |
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