View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_10 (Length: 408)

Name: NF18058_low_10
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18058_low_10
NF18058_low_10
[»] chr1 (3 HSPs)
chr1 (1-392)||(5538080-5538472)
chr1 (67-283)||(40302094-40302308)
chr1 (324-357)||(47388965-47388998)
[»] chr2 (3 HSPs)
chr2 (50-392)||(25574081-25574428)
chr2 (1-53)||(32726487-32726539)
chr2 (1-49)||(39331717-39331765)
[»] chr3 (1 HSPs)
chr3 (1-53)||(44187351-44187403)
[»] chr6 (3 HSPs)
chr6 (68-188)||(8047946-8048065)
chr6 (324-357)||(2626616-2626649)
chr6 (324-357)||(34324967-34325000)
[»] chr8 (4 HSPs)
chr8 (324-357)||(3752974-3753007)
chr8 (324-357)||(19251702-19251735)
chr8 (324-357)||(19324886-19324919)
chr8 (324-357)||(45288203-45288236)
[»] chr7 (1 HSPs)
chr7 (324-357)||(42921757-42921790)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 5538472 - 5538080
Alignment:
Q  1 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactatatgttactagatggacatgagaaccaaattgttcgaaagcatgtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538472 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactatatgttactagatggacatgagaaccaaattgttcgaaagcatgtcat 5538373  T
Q  101 agttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaagcaaaaaccttacaatcactatttgatttacatc 200  Q
    |||||||| |||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5538372 agttcttggaggtgaatcaagattgaagccaaaaaaacggacggaaaatgattccaatggcataaagcaaaaaccttacaatcaccatttgatttacatc 5538273  T
Q  201 tatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatattttttacgagcagatgcaaatgtggttatgttttgtaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538272 tatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatattttttacgagcagatgcaaatgtggttatgttttgtaat 5538173  T
Q  301 tttcaatcatata-nnnnnnnnnnatgaatatgaagtttgcattttcactcctattctgctctttcccttaatttgctagaatgtgaaaaatg 392  Q
    |||||||||||||           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5538172 tttcaatcatatatttttttttttatgaatatgaagtttgcattttcactcctattctgctctttccgttaatttgctagaatgtgaaaaatg 5538080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 67 - 283
Target Start/End: Complemental strand, 40302308 - 40302094
Alignment:
Q  67 gacatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaa 166  Q
    ||||||||||||||| |||||||||||||||  ||||||||| |||||||||||| ||||||||       |||||||||||||||||||||||||||||    
T  40302308 gacatgagaaccaaactgttcgaaagcatgtggtagttcttggaggtgaatcaaggttgaagccaaaaaagcggacggaaaatgactccaatggcataaa 40302209  T
Q  167 gcaaaaaccttacaatcactatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcaccatcactcaatatttttt 266  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  || | || ||||||||||    
T  40302208 gcaaaaaccttataatcactgtatgatttacatctatacatatattttg-ttatagagggtgcatttgaaatttttcatcgtca-ctcttaatatttttt 40302111  T
Q  267 acgagcagatgcaaatg 283  Q
    || ||||||||||||||    
T  40302110 acaagcagatgcaaatg 40302094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 47388998 - 47388965
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  47388998 atgaatatgaagtttgcattttcactcatattct 47388965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 50 - 392
Target Start/End: Complemental strand, 25574428 - 25574081
Alignment:
Q  50 ctatatgttactagatggacatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaat 149  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||        ||| |||||||    
T  25574428 ctatatgttactaggtggacatgagaaccaaactgttcgaaagcatgtgatagttcttgaaggtgaatcaaggttgaagccaaaaaagtggatggaaaat 25574329  T
Q  150 gactccaatggcataaagcaaaaaccttacaatcactatttgatttacatctatacatatattttgtttatagagggtgcatttgaaaattttcatcacc 249  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25574328 gattccaatggcataaagcaaaaaccttacaatcactatttgatttacatctatacatatattttg-ttatagagggtgcatttgaaaattttcatcacc 25574230  T
Q  250 atcactc--aatattttttacgagcagatgcaaatgtggttatgttttgtaattttcaatcata------tannnnnnnnnnatgaatatgaagtttgca 341  Q
    || ||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||      |           ||||||||||||||||||    
T  25574229 attactcttaatattttttacgagcagatgcaaa--tggttatgttttgtaattttcaatcatatttattttttatttttttatgaatatgaagtttgca 25574132  T
Q  342 ttttcactcctattctgctctttcccttaatttgctagaatgtgaaaaatg 392  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25574131 ttttcactcctattctgctctttccctaaatttgctagaatgtgaaaaatg 25574081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32726539 - 32726487
Alignment:
Q  1 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726539 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat 32726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39331765 - 39331717
Alignment:
Q  1 atcacaagaaggtggattaaatggtttcccttattcaattagagcatca 49  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39331765 atcacaagaaggtggattaaatggtttgccttattcaattagagcatca 39331717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44187403 - 44187351
Alignment:
Q  1 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44187403 atcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat 44187351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 8048065 - 8047946
Alignment:
Q  68 acatgagaaccaaattgttcgaaagcatgtcatagttcttgaaggtgaatcaagattgaagccnnnnnnncggacggaaaatgactccaatggcataaag 167  Q
    |||||||||||||| |||| ||||||||||  | ||||||| |||||||||||| ||||||||        ||| || ||||||||||||||||||||||    
T  8048065 acatgagaaccaaactgttagaaagcatgtggt-gttcttggaggtgaatcaaggttgaagccaaaaaagaggatgggaaatgactccaatggcataaag 8047967  T
Q  168 caaaaaccttacaatcactat 188  Q
     |||||||||| ||| |||||    
T  8047966 gaaaaaccttaaaattactat 8047946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 2626649 - 2626616
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  2626649 atgaatatgaagtttgcattttcactcatattct 2626616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 34324967 - 34325000
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  34324967 atgaatatgaagtttgcattttcactcatattct 34325000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 3752974 - 3753007
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  3752974 atgaatatgaagtttgcattttcactcatattct 3753007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 19251702 - 19251735
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  19251702 atgaatatgaagtttgcattttcactcatattct 19251735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 19324886 - 19324919
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  19324886 atgaatatgaagtttgcattttcactcatattct 19324919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 45288236 - 45288203
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  45288236 atgaatatgaagtttgcattttcactcatattct 45288203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 42921757 - 42921790
Alignment:
Q  324 atgaatatgaagtttgcattttcactcctattct 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  42921757 atgaatatgaagtttgcattttcactcatattct 42921790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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