View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_12 (Length: 400)
Name: NF18058_low_12
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 34993952 - 34993580
Alignment:
| Q |
16 |
tgggtctataaaaaataaagtaaatcattttggaagtgtgattcttgaatagaacggtggaaataatatacacttccgaattccaaaaataagttctgga |
115 |
Q |
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| T |
34993952 |
tgggtctataaaaaataaagtaaatcattttggaagtgtgattcttgaatagaacggtggaaataatatacacttcccaattccaaaaataagttctgga |
34993853 |
T |
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| Q |
116 |
agtgtaattccttagtaaatcagttttattgaagtagtaatttggaccatcaaattttgnnnnnnnctatgggtatgatactcataataggccggtgcaa |
215 |
Q |
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| T |
34993852 |
agtgtaattccttagtaaatcagttttattgaagcagtaatttggaccatcaaattttgtttttttctatgggtatgatactcataataggccggtgcaa |
34993753 |
T |
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| Q |
216 |
gtgcaagtatatattgtagtactacaaaacacatgctaattagggaaaaagtgatgtttaaatatggtgcatgtaatggtgatttatccccgttgcattt |
315 |
Q |
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| T |
34993752 |
gtatatat-tgtagtgtagtactacaaaacacatgctaattagggaaaaagtgatgtttaaatatggtgcatgtaatggtgatttatccccgttgcattt |
34993654 |
T |
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| Q |
316 |
atttctgccgg----tatatatatatgtctctgtccacgttgttgaagcatgcacatgggctactcacgtacgt |
385 |
Q |
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| T |
34993653 |
atttctgccggtatatatatatatatgtctctgtccacgttgttgaagcatacacatgggctactcacgtacgt |
34993580 |
T |
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