View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_14 (Length: 384)
Name: NF18058_low_14
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 44838291 - 44838650
Alignment:
| Q |
17 |
cactatgggctagacgacctcgttaccattgctcattgatttgtctactattaagaatagaggaaaaggtacagcagcaacaactaaacatttcatggca |
116 |
Q |
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| T |
44838291 |
cactatgggctagacgacctcgttaccattgctcattgatttgtctactattaagaatagaggaaaaggtacagcagcaacaactaaacatttcatggca |
44838390 |
T |
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| Q |
117 |
gtatctgtatttctatcttattttcgttgctagtctactttgaaaggtcgtagtggaggagtttaatgggtacaaaaatcacatttttgtaggcaaaatc |
216 |
Q |
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| T |
44838391 |
gtatctgtatttctatcttattttccttcctagtctactttgaaaggtcgtagtggaggagtttaatgggtacaaaaatcacatttttgtaggcaaaatc |
44838490 |
T |
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| Q |
217 |
atctcatatgagaagaaattgagaatgtgacnnnnnnntatttttatcttattcttatccatccgtgaactacaaaaatataaataacaatgttgcaaca |
316 |
Q |
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| T |
44838491 |
atctcatatgagaagaaattgagaatgtgacaaaaaaatatttttatcttattcttatccatccgtgaactacaaaaatataaataacaatgttgcaaca |
44838590 |
T |
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| Q |
317 |
gcaaaaacttttcaacaaaacagccaagtagaagcacatcctaactccaacttgatgatg |
376 |
Q |
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| T |
44838591 |
gcaaaaacttttcaacaaaacagccaagcagaagcacatcctaactccaacttgatgatg |
44838650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 44849978 - 44850308
Alignment:
| Q |
20 |
tatgggctagacgacctcgttaccattgctcattgatttgtctactattaagaatagaggaaaaggtacagcagcaacaactaaacatttcatggcagta |
119 |
Q |
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| T |
44849978 |
tatgggctggaccagctcgttaccattgctcattgatttgtttactaataagaataggggtaaaggtact-ctgcaacatctaaacatttcatggcagta |
44850076 |
T |
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| Q |
120 |
tctgtatttctatcttattttcgttgctagtctactttgaaaggtcgtagtggaggagtttaatgggtacaaaaatcacatttttgtaggcaaaatcatc |
219 |
Q |
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|| |||||||||||| |||||| ||||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||| ||||||| |||| |
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| T |
44850077 |
tcagtatttctatctcattttcaatgctagtctactttgaaag-tcagagtggaggagattaatgggcacaaaaatcacatttttgcaggcaaatacatc |
44850175 |
T |
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| Q |
220 |
tcatatgagaagaaattgagaatgtgacnnnnnnntatttttatcttattcttatccatccgtgaactacaaaaatataaataacaatgttgcaacagca |
319 |
Q |
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| T |
44850176 |
tcacatgagaagaaaatgagaatgtgac--aaaaatatttt-------atcttatccattcatgaactacaaaaatataaat-----------aacagca |
44850255 |
T |
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| Q |
320 |
aaaacttttcaacaaaacagccaagtagaagcacatcctaactccaacttgat |
372 |
Q |
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| T |
44850256 |
aaaacttttcaacaaaacagccaagcagaaccatatcctaactccaacttgat |
44850308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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