View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18058_low_16 (Length: 344)
Name: NF18058_low_16
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 33718577 - 33718899
Alignment:
| Q |
18 |
gaacacaactaatatatcagaaaggctgcgaggaataagatcctaagctacaaaaggcaaggcttcctatataatgtaactatataaagcgttatgactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33718577 |
gaacacaactaatatatcagaaaggctgcgaggaataagatcctaagctacaaaaggcaaggcttcctatataatgtaactatataaagcgttatgactt |
33718676 |
T |
|
| Q |
118 |
caaagtagacaaaatttcacatacacatgaaatgatgtaaaagatgctagccttgaaagtaattatcacaagcaacaaattgcttgatattggttagtca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
33718677 |
caaagtagacaaaatttcacatacacatgaaatgatgtaaaagatgctagccttgaaagtaattatcacaagcaacaaattgcttgacattgattagtca |
33718776 |
T |
|
| Q |
218 |
atagttagacccag------------tgcgataaataacaggatagaaataacagacgacaaagaaacgagatgattcttggaccttgaagaggagattg |
305 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33718777 |
atagttagagccagttagttagagtctgcgataaataacaggatagaaataacagacgacaaagaaacgagatgattcttggaccttgaagaggagattg |
33718876 |
T |
|
| Q |
306 |
ggagggaaagcctaggtctttca |
328 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33718877 |
ggagggaaagcctaggtctttca |
33718899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University