View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_18 (Length: 323)

Name: NF18058_low_18
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18058_low_18
NF18058_low_18
[»] chr3 (25 HSPs)
chr3 (18-298)||(6265595-6265875)
chr3 (18-286)||(6882420-6882688)
chr3 (34-265)||(6245224-6245455)
chr3 (18-278)||(6259123-6259383)
chr3 (18-265)||(6168828-6169075)
chr3 (34-275)||(6142213-6142454)
chr3 (37-258)||(13270420-13270641)
chr3 (35-251)||(8568835-8569051)
chr3 (40-251)||(6591223-6591434)
chr3 (32-270)||(6900020-6900258)
chr3 (23-263)||(7749938-7750178)
chr3 (36-247)||(5298661-5298872)
chr3 (18-263)||(6917040-6917285)
chr3 (37-204)||(5280654-5280821)
chr3 (18-286)||(6721939-6722207)
chr3 (68-263)||(8589640-8589835)
chr3 (128-247)||(7587802-7587921)
chr3 (115-263)||(5267970-5268118)
chr3 (68-263)||(6520085-6520280)
chr3 (68-179)||(8454649-8454760)
chr3 (68-263)||(6554361-6554556)
chr3 (68-263)||(6735901-6736096)
chr3 (68-149)||(6479905-6479986)
chr3 (40-263)||(5250083-5250306)
chr3 (68-179)||(6947264-6947375)
[»] chr1 (1 HSPs)
chr1 (40-276)||(35140229-35140472)
[»] chr7 (1 HSPs)
chr7 (35-251)||(6573185-6573401)
[»] scaffold0425 (1 HSPs)
scaffold0425 (68-179)||(7400-7511)
[»] chr4 (1 HSPs)
chr4 (115-244)||(25242124-25242256)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 6265875 - 6265595
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6265875 atgagatccacacgactacttcatttaaagcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaat 6265776  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||  ||||| ||||||||||||||    
T  6265775 atccaaatcttgaattgattggcaagaaaatagtagcaaaatgtggggggttgcctttaactctgaaaacattggggattctcttccaaagaaaattctc 6265676  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgtttacccgaggatgacaactacattaattttgctgtgag 298  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||||    
T  6265675 tgtaactgaatgggttgagatattggagactgatttgtggtgtttacccgagggtgacaactgcattaattttgctctgag 6265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 6882688 - 6882420
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    ||||||||||| || ||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||| |||    
T  6882688 atgagatccacccggctaatacacttaaagcaattggaggagagtgattcttggagtttatttgtgagatatgcttttcaaggtaggaatgtatttgaat 6882589  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
    ||||||||||||||| ||| |||||||||||||||| ||  |||||||||| ||||||||| ||||||| ||||||||| ||||||| || |||||||||    
T  6882588 atccaaatcttgaattgataggcaagaaaatagtagaaaagtgtggggggttgcctttagcactgaaaacattggggaatctcttgctaaaaaaattctc 6882489  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgtttacccgaggatgacaactacattaa 286  Q
    || | |||||||| || || ||||||||||||||| ||||||||||||||||| ||| | |||||||||    
T  6882488 tgaatctgaatggattaaggtattggagactgatttgtggcgtttacccgagggtgaaatctacattaa 6882420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 6245455 - 6245224
Alignment:
Q  34 tacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatc 133  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||| |||||| |||| ||||| |||||||||||||||||||    
T  6245455 tacttcatttaaggcaattggaggagagtgactcttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatc 6245356  T
Q  134 gattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggtt 233  Q
    |||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||||||||    
T  6245355 gattggtatgaaaatagtagaaaaatgtggggggtcgcctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggtt 6245256  T
Q  234 gagatattggagactgattcgtggcgtttacc 265  Q
     ||||||| |||||||||| ||||||||||||    
T  6245255 aagatattagagactgatttgtggcgtttacc 6245224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 6259383 - 6259123
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    ||||||||||| ||  || ||||| ||| ||||||||||||||||||  |||||| ||||||||| ||| |||||||| |||||| |||| ||||| |||    
T  6259383 atgagatccacccggataattcatctaaggcaattggaggagagtgactcttggaatttatttgtaagacatgcttttgaaggcaggaatatgtttgaat 6259284  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||  |||||||||||||| |||||    
T  6259283 atccaaatcttgaatcgatcggcaagaaaatagtagaaaaatgtggggggttgccttcagctctgaaaacattggggattctcttgcaaagaaagttctc 6259184  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgtttacccgaggatgacaac 278  Q
    || || |||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||    
T  6259183 tgaaaatgaatgggttaagatattggagactgatttgtggcgtttacccaagggtgacaac 6259123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 6169075 - 6168828
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    ||||||||||| |   |||||||||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||| |||||| |||| ||||| |||    
T  6169075 atgagatccacccagatacttcatttaaggcaattggaggagagtgactcttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaat 6168976  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
    |||||||||||||||||||||| | ||||||||||| || |||||||||||||||||| ||||| |||| ||||||||  ||||||||||||| ||||||    
T  6168975 atccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtggggggtcgccttttgctctaaaaacattggggattctcttgcaaagaagattctc 6168876  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgtttacc 265  Q
    || || |||||||||| ||||||| |||||||||| |||| |||||||    
T  6168875 tgaaaatgaatgggttaagatattagagactgatttgtggagtttacc 6168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 275
Target Start/End: Complemental strand, 6142454 - 6142213
Alignment:
Q  34 tacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatc 133  Q
    |||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||| ||| | ||||||||||  |||||||||||||||||     
T  6142454 tacttcatttgaagcaattggaggagagtaactcttggagtttatttgtgagatatgcttttccaggtaggaatgtgtttggatatccaaatcttgaatt 6142355  T
Q  134 gattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggtt 233  Q
    ||| |||||||||||||||| ||  |||||||||| ||| ||||||||||||| ||||||||  |||||| | ||||||||||||| || ||||||||||    
T  6142354 gataggcaagaaaatagtagaaaagtgtggggggttgccattagctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggtt 6142255  T
Q  234 gagatattggagactgattcgtggcgtttacccgaggatgac 275  Q
      ||||||||||||||||| |||||||||||| |||| ||||    
T  6142254 aggatattggagactgatttgtggcgtttaccagagggtgac 6142213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 13270420 - 13270641
Alignment:
Q  37 ttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgat 136  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||| |||||| |||| ||||| ||||||||||||||||||| ||    
T  13270420 ttcatttaaggcaattggaggagagtgactcttggagtttatttgtgagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatccat 13270519  T
Q  137 tggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgag 236  Q
     || | || |||||||| || ||||||||| | ||||||||||||||||| ||||||||  |||||||||||||||||||||| || | |||||||| ||    
T  13270520 cggtatgagaatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggttaag 13270619  T
Q  237 atattggagactgattcgtggc 258  Q
    |||||||||||||||| |||||    
T  13270620 atattggagactgatttgtggc 13270641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 8568835 - 8569051
Alignment:
Q  35 acttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcg 134  Q
    ||||||||||||||||||||||||||  |||  ||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  8568835 acttcatttaaagcaattggaggagaaagattgttggagtttatttgtgaaacatgcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcg 8568934  T
Q  135 attggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttg 234  Q
    ||||| ||||| || |||| ||  ||||| |||| |||||||||| |||||| ||||||||| ||||||||||||||||| |||  |  |||||||  |     
T  8568935 attggaaagaagattgtagaaaagtgtggagggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtcta 8569034  T
Q  235 agatattggagactgat 251  Q
    | |||||||||||||||    
T  8569035 acatattggagactgat 8569051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 6591223 - 6591434
Alignment:
Q  40 atttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattgg 139  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||| ||| | | |||||||| ||||||||| ||||| || ||| ||    
T  6591223 atttaaatcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcgaggtagggatgtgtttgaatatccaactcttgtattgatagg 6591322  T
Q  140 caagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagata 239  Q
    |||||||||||||| ||  |||||||||   ||||||||||| |||| | ||||| |||| ||||||| ||||||||||||||| |||||| |  |||||    
T  6591323 caagaaaatagtagaaaagtgtggggggattcctttagctctaaaaacaatggggcaacttttgcaaaaaaaattctctgtaaccgaatggatgaagata 6591422  T
Q  240 ttggagactgat 251  Q
    ||||||||||||    
T  6591423 ttggagactgat 6591434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 6900258 - 6900020
Alignment:
Q  32 actacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaa 131  Q
    ||||||||||||||| |||||| |||||||||||  ||||||||||||||||| | |||| |||| ||| |  || || ||| ||||||||||||| |||    
T  6900258 actacttcatttaaaacaattgaaggagagtgattgttggagtttatttgtgaaacatgcctttctaggaagaaaagtatttgaatatccaaatctggaa 6900159  T
Q  132 tcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatggg 231  Q
    | ||| |||||  ||||||||  ||  ||||  |||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||||| | |||| ||||    
T  6900158 ttgataggcaaacaaatagtacaaaagtgtgaagggttgcctttagctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattggg 6900059  T
Q  232 ttgagatattggagactgattcgtggcgtttacccgagg 270  Q
    || |||| |||||||||||||  ||||||||||| ||||    
T  6900058 ttaagatgttggagactgatttctggcgtttaccagagg 6900020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 7750178 - 7749938
Alignment:
Q  23 atccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatcca 122  Q
    |||||| || ||||||| |||||| |||||| | ||||||||  ||||||| |||||||||    ||||||||   ||||||||| | ||| ||||||||    
T  7750178 atccacccggctacttcgtttaaatcaattgaatgagagtgactcttggagcttatttgtgcatcatgcttttttgggcaagaatatatttgaatatcca 7750079  T
Q  123 aatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaa 222  Q
    ||||| || ||||| |||||||||||||||| ||  |||||||||| ||||||||||||  ||| ||||||| || | |||||||  ||||||| || ||    
T  7750078 aatctcgagtcgatcggcaagaaaatagtagaaaagtgtggggggttgcctttagctctagaaacattggggcaattattgcaaaacaaattctgtgaaa 7749979  T
Q  223 ctgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    |||||||| || | |||||||||||||||  ||||||||||    
T  7749978 ctgaatggattaaaatattggagactgatatgtggcgttta 7749938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 5298872 - 5298661
Alignment:
Q  36 cttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcga 135  Q
    |||||||| ||||||||| || |||||||   ||||||| | ||||||||| | |||||||| ||||  ||||    | ||||||||||||||||||| |    
T  5298872 cttcatttgaagcaattgaagaagagtgaatgttggagtatgtttgtgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaa 5298773  T
Q  136 ttggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttga 235  Q
    ||||||||||||| |||| ||  ||||| |||| |||| ||||| | |||  ||||||||| ||||||| |||||||||||||  |  |||||||||| |    
T  5298772 ttggcaagaaaatcgtagaaaagtgtggagggttgcctctagctgtaaaagcattggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaa 5298673  T
Q  236 gatattggagac 247  Q
    ||||||||||||    
T  5298672 gatattggagac 5298661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 6917285 - 6917040
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    ||||||||||| || |||||| ||||||||||||| || ||||||| |  | ||||||||||||||||  |||||||||| |  | ||||| |  | ||     
T  6917285 atgagatccacccggctacttgatttaaagcaattagaagagagtggttgtaggagtttatttgtgagtcatgcttttcatgataggaatgcgagtcaac 6917186  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
    ||||||||||||||   |||||||||||||||||||  | |||||| |||| ||||||| || ||| | || |||| || |||||||  |||| ||||||    
T  6917185 atccaaatcttgaaattattggcaagaaaatagtagacaaatgtggagggttgcctttaactgtgacagaaatgggtaatctcttgcgtagaagattctc 6917086  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    |  |  ||| |||||| ||||| |||||||||||| |||| |||||    
T  6917085 taaacgtgagtgggttaagataatggagactgatttgtggtgttta 6917040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 5280821 - 5280654
Alignment:
Q  37 ttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgat 136  Q
    ||||||| |||||||||||||| || |||| ||||| ||||||||||||| |||||||||| || || ||||    | ||||||||||||||||||| ||    
T  5280821 ttcatttgaagcaattggaggaaagcgatggttggaatttatttgtgagacatgcttttcacggaaaaaatgcaagtgaatatccaaatcttgaatcaat 5280722  T
Q  137 tggcaagaaaatagt-agcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgc 204  Q
    ||| |||||||| || | |||| ||||| ||| |||||||||||||||||  ||| ||||| |||||||    
T  5280721 tgggaagaaaattgtaaacaag-tgtggagggccgcctttagctctgaaatcattagggaatctcttgc 5280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 6721939 - 6722207
Alignment:
Q  18 atgagatccacacgactacttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaat 117  Q
    ||||||||||| || |||||||||||| | ||||||||||| |||||  |||||||  |||||||||   ||||||||| ||||| |||| ||||| | |    
T  6721939 atgagatccacccggctacttcatttatatcaattggaggaaagtgactcttggaggatatttgtgaatcatgcttttcgaggcaggaatttgtttgatt 6722038  T
Q  118 atccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctc 217  Q
     |||||||||||| ||| ||  ||||||| | | || ||  ||||| |||| ||||||||||||||||| |||||| || || |||  || |  ||| ||    
T  6722039 ttccaaatcttgagtcggttatcaagaaagtggcagaaaagtgtggagggttgcctttagctctgaaaacattgggtaatcttttgagaatacgattttc 6722138  T
Q  218 tgtaactgaatgggttgagatattggagactgattcgtggcgtttacccgaggatgacaactacattaa 286  Q
    |  |  |||||||| | |||||||||||||||||| |||| ||||| | |||| ||| ||| |||||||    
T  6722139 taaacttgaatgggatcagatattggagactgatttgtggtgtttatcagagggtgagaacaacattaa 6722207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 8589835 - 8589640
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtagcaagatgtgggggg 167  Q
    ||||||||||||||||| | ||||||||||||| |||||||||| | ||||||||||||||||||| | ||||||||||||| | |  |  ||||| |||    
T  8589835 ttggagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaatcttgaatcaactggcaagaaaatactggataagtgtggaggg 8589736  T
Q  168 tcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    | |||||||||| | |||  | ||||  ||||||||| |||||| || |||  |  ||| ||| || |||||||||||||| ||  ||||||||||    
T  8589735 ttgcctttagctgtaaaatcaatgggccaactcttgcgaagaaatttttctcaacatgagtggattaagatattggagactaatatgtggcgttta 8589640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 7587921 - 7587802
Alignment:
Q  128 tgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaa 227  Q
    |||||||||||||||||| || ||||  | |||||| |||| |||| ||||| |||||| ||||||||||||| ||||||||||||| |||  | |||||    
T  7587921 tgaatcgattggcaagaagattgtagagaaatgtggagggttgcctctagctgtgaaaacattggggaaactcctgcaaagaaaattttctcaagctgaa 7587822  T
Q  228 tgggttgagatattggagac 247  Q
    ||| || |||||||||||||    
T  7587821 tggtttaagatattggagac 7587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 5268118 - 5267970
Alignment:
Q  115 aatatccaaatcttgaatcgattggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaatt 214  Q
    |||| |||||||||||||| ||||| |||||||||||||  |  ||||| ||||  ||||||||| | ||||  ||||| || ||||||| |||||||||    
T  5268118 aatacccaaatcttgaatcaattggaaagaaaatagtagataagtgtggagggttacctttagctgtaaaaactttgggaaatctcttgcgaagaaaatt 5268019  T
Q  215 ctctgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    ||||  |  |||||||||| ||||||||||||| |||  ||||||||||    
T  5268018 ctctcaacatgaatgggttaagatattggagacagatatgtggcgttta 5267970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 263
Target Start/End: Original strand, 6520085 - 6520280
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtag-caagatgtggggg 166  Q
    |||||||||||||| || | ||||||||||||||| |  ||||| | | |||||||| |||||| ||||||||| ||||||||| | |||| ||||| ||    
T  6520085 ttggagtttatttgagacacatgcttttcaaggcatgcgtgtgtgtgactatccaaaacttgaaacgattggcatgaaaatagtggacaag-tgtggtgg 6520183  T
Q  167 gtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    || |||||||||| | |||  ||||||  |||| |||| || ||| || |||  |  ||||||| | ||||||||||||||||||  ||||||||||    
T  6520184 gttgcctttagctataaaatcattgggccaacttttgcgaaaaaagttttctcaagatgaatggatggagatattggagactgatatgtggcgttta 6520280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 8454760 - 8454649
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtagcaagatgtgggggg 167  Q
    ||||||||||||||||| | ||||||||||||| |||| ||||| | |||||||||||||||||||  |||| |  |||||||| | ||  ||||| |||    
T  8454760 ttggagtttatttgtgacacatgcttttcaaggaaagagtgtgtctgaatatccaaatcttgaatcagttggtagaaaaatagtggaaaagtgtggaggg 8454661  T
Q  168 tcgcctttagct 179  Q
    | ||||||||||    
T  8454660 ttgcctttagct 8454649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 263
Target Start/End: Original strand, 6554361 - 6554556
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtag-caagatgtggggg 166  Q
    |||||| |||||||||| | ||||||||||||| || | ||||| | ||||||||||||||||| | ||||| | ||||||||| | |||| ||||| ||    
T  6554361 ttggagattatttgtgacacatgcttttcaaggaaaaagtgtgtgtgaatatccaaatcttgaaacaattgggaggaaaatagtggacaag-tgtggagg 6554459  T
Q  167 gtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    || |||||||||| | |||  |||||   ||||  |||| | |||| | |||| |  ||||||| || |||||||||||||||||  ||||||||||    
T  6554460 gttgcctttagctataaaatcattggcacaacttctgcataaaaaaatttctgaacatgaatggattaagatattggagactgatatgtggcgttta 6554556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 6736096 - 6735901
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtagcaagatgtgggggg 167  Q
    |||||| |||||||||| | |||| |||||||| || | ||| | | ||||||||||||||||||| ||||| ||||||||||| |  |  ||||| |||    
T  6736096 ttggagattatttgtgacacatgcgtttcaaggaaaaagtgtttgtgaatatccaaatcttgaatcaattgggaagaaaatagtggagaagtgtggaggg 6735997  T
Q  168 tcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgttta 263  Q
    | |||| ||||| | |||  ||||||  |||| ||||  | |||| | |||| |  ||||||| || |||||||||||||||||  ||||||||||    
T  6735996 ttgcctctagctataaaatcattgggccaacttttgcgtaaaaaactttctgaacatgaatggattaagatattggagactgatatgtggcgttta 6735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 6479905 - 6479986
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaata 149  Q
    |||||| ||||||||||   |||||||||||||||||| ||||| | | |||||||| |||||||| ||||||| |||||||    
T  6479905 ttggagattatttgtgactcatgcttttcaaggcaagagtgtgtgtgactatccaaaacttgaatcaattggcaggaaaata 6479986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 5250306 - 5250083
Alignment:
Q  40 atttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattgg 139  Q
    ||||| || ||||| ||||||||||   ||||||| | ||||||||| |||||||| | || | |||||    | ||||||||||||||||||| |||||    
T  5250306 atttagagaaattgaaggagagtgaatgttggagtatgtttgtgagacatgctttttacggaaggaatgcaagtgaatatccaaatcttgaatctattgg 5250207  T
Q  140 caagaaaatagta-gcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagat 238  Q
     ||||||||  || ||||| ||||| |||| ||| |||||| | ||||  ||||| || ||||||| |||||| || |||  |  ||| |||||| ||||    
T  5250206 taagaaaattataggcaag-tgtggagggttgccattagctgtaaaaactttgggaaatctcttgcgaagaaagttttctcaacgtgattgggttaagat 5250108  T
Q  239 attggagactgattcgtggcgttta 263  Q
    ||||||||| |||  ||||||||||    
T  5250107 attggagacagatatgtggcgttta 5250083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 6947375 - 6947264
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtag-caagatgtggggg 166  Q
    |||||||||||||| || | ||||||||||||||| |  ||||| | |  ||||||| |||||||| ||||| | ||||||||| | |||| ||||| ||    
T  6947375 ttggagtttatttgagacacatgcttttcaaggcatgcgtgtgtgtgacgatccaaaacttgaatcaattgggaggaaaatagtggacaag-tgtggagg 6947277  T
Q  167 gtcgcctttagct 179  Q
    || ||||||||||    
T  6947276 gttgcctttagct 6947264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 276
Target Start/End: Original strand, 35140229 - 35140472
Alignment:
Q  40 atttaaagcaattggaggagagtgatgcttg-gagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattg 138  Q
    |||||| ||||||||||||||||||  |||  |||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||| ||||||    
T  35140229 atttaaggcaattggaggagagtgactcttaagagtttatttgtgagatatggttttgaaggcaggaatatgtttgaatatccaaatcttgaaacgattg 35140328  T
Q  139 gcaagaaaatagtagcaagatgt------ggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggt 232  Q
    | | |||| |||||| || ||||      |||||||   ||||||||||||||| | ||||||  |||||||||||||||||||| | || |||||||||    
T  35140329 gtatgaaactagtagaaaaatgtggggtgggggggttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggt 35140428  T
Q  233 tgagatattggagactgattcgtggcgtttacccgaggatgaca 276  Q
    | |||||||||||||||||| | ||||||||||| ||| |||||    
T  35140429 taagatattggagactgatttgcggcgtttacccaagggtgaca 35140472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 6573185 - 6573401
Alignment:
Q  35 acttcatttaaagcaattggaggagagtgatgcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcg 134  Q
    ||||| ||||||| | ||||||||||  |||  ||||||||||||||||| | ||||||||| ||| || ||||||||| | ||||||||||||||||||    
T  6573185 acttcttttaaagaatttggaggagaaagattgttggagtttatttgtgaaacatgcttttcgaggaaaaaatgtgtttgactatccaaatcttgaatcg 6573284  T
Q  135 attggcaagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttg 234  Q
    ||||||||| | || ||||  | |||||| |||| |||||||||  |||||| ||||||||| ||||||||||||||||| |||     ||||||| ||     
T  6573285 attggcaaggagattgtagacaaatgtggagggttgcctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggttta 6573384  T
Q  235 agatattggagactgat 251  Q
    |||||||||| ||||||    
T  6573385 agatattggaaactgat 6573401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 7400 - 7511
Alignment:
Q  68 ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttaaatatccaaatcttgaatcgattggcaagaaaatagtag-caagatgtggggg 166  Q
    |||||| |||||||||| | ||||||||||||| || | ||||| | ||||||||||||||||| | ||||| ||||||||||| | |||| ||||| ||    
T  7400 ttggagattatttgtgacacatgcttttcaaggaaaaagtgtgtgtgaatatccaaatcttgaaacaattgggaagaaaatagtggacaag-tgtggagg 7498  T
Q  167 gtcgcctttagct 179  Q
    || ||||||||||    
T  7499 gttgcctttagct 7511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 25242124 - 25242256
Alignment:
Q  115 aatatccaaatcttgaatcgattggcaagaa---aatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaa 211  Q
    ||||||||||||||| ||| |||||||||||   |||||||| ||  ||||| | || |||||||||| | |||| |  |||||| ||||||| ||||||    
T  25242124 aatatccaaatcttgcatcaattggcaagaaaataatagtagaaaagtgtggagcgttgcctttagctgtaaaaacaacggggaatctcttgcgaagaaa 25242223  T
Q  212 attctctgtaactgaatgggttgagatattgga 244  Q
    |||||||  |  |||||||||| ||||||||||    
T  25242224 attctctcaacatgaatgggttaagatattgga 25242256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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