View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_2 (Length: 656)

Name: NF18058_low_2
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18058_low_2
NF18058_low_2
[»] chr7 (4 HSPs)
chr7 (225-643)||(42302649-42303066)
chr7 (24-137)||(42303154-42303267)
chr7 (406-457)||(4411507-4411558)
chr7 (406-499)||(27964649-27964740)
[»] chr5 (2 HSPs)
chr5 (262-640)||(2368872-2369256)
chr5 (19-137)||(2372684-2372806)
[»] chr6 (1 HSPs)
chr6 (361-638)||(14208263-14208533)
[»] chr1 (2 HSPs)
chr1 (317-436)||(19789726-19789846)
chr1 (492-554)||(19789896-19789957)
[»] chr8 (3 HSPs)
chr8 (356-462)||(43720518-43720624)
chr8 (406-499)||(14836949-14837040)
chr8 (529-586)||(43720697-43720754)
[»] chr4 (1 HSPs)
chr4 (356-586)||(28021944-28022180)
[»] chr2 (1 HSPs)
chr2 (406-499)||(32280552-32280643)
[»] chr3 (1 HSPs)
chr3 (406-499)||(32075978-32076069)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 225 - 643
Target Start/End: Complemental strand, 42303066 - 42302649
Alignment:
Q  225 gcttaaggttataatgtctatttccaatccnnnnnnnatgagttggagaaatgcaaagatatgttatttcccctgttcaagttgttgtttggattcatca 324  Q
    ||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42303066 gcttaaggttataatgtctattttcaatcctttttt-atgagttggagaaatgcaaagatatgttatttcccctgttcaagatgttgtttggattcatca 42302968  T
Q  325 gcttttgggtaatttttccatcttcaattatttcttattttacatgtttgatcgaatgcctcatggatttacttttacaaatcatgttctttttgggtta 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42302967 gcttttgggtaatttttccatcttcaattatttcttattttacatgtttgatcgaatgcctcatggatttacttttacaactcatgttctttttgggtta 42302868  T
Q  425 caaatgtgtgttatgtatttaggctttgaaattgtctccaagtcttgttaaattcttcaatgaatccttttatttaagttgtgaattcaattctctaaca 524  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42302867 caaatgtgtgttttatatttaggctttgaaattgtctccaagtcctgttaaattcttcaatgaatccttttatttaagttgttaattcaattctctaaca 42302768  T
Q  525 ccattatgcaagggattgagaagagataaaacatggctcttgattttgttttatttatctggattttttgtaggatatactccgttctgaaaggtagtac 624  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42302767 ccattatgcaagggattgagaagagataaaacaaggctcttgattttgttttatttatctggattttttgtaagatatactccgttctgaaaggtagtac 42302668  T
Q  625 taacaaactactctctgct 643  Q
    |||||||||||||||||||    
T  42302667 taacaaactactctctgct 42302649  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 42303267 - 42303154
Alignment:
Q  24 atattattaatgttgtttctctgtattagactcgttgtagggattcaaagtttaattttcaaaaaagggggatcgattcgtgaattaaattagaagtaaa 123  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||    
T  42303267 atattattaatgttgtttctctgtattagactcattgtaaggattcaaagtttaattttcaaaaaagggggattgattcatgaaataaattagaagtgaa 42303168  T
Q  124 ttaccaatattgaa 137  Q
    || |||||||||||    
T  42303167 tttccaatattgaa 42303154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 4411507 - 4411558
Alignment:
Q  406 tcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaatt 457  Q
    ||||||||||||||||||||||||||||||| |  |||||| |||| |||||    
T  4411507 tcatgttctttttgggttacaaatgtgtgttttagatttagactttaaaatt 4411558  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 27964740 - 27964649
Alignment:
Q  406 tcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtctccaagtcttgttaaattcttcaatgaatccttttattt 499  Q
    |||||||||||||||||| ||||||| |||| |  | ||||||||| ||||||||||| | || | ||| |||||| ||||||| |||||||||    
T  27964740 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctcc-actccttttacattcttgaatgaattcttttattt 27964649  T

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Target: chr5 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 262 - 640
Target Start/End: Complemental strand, 2369256 - 2368872
Alignment:
Q  262 atgagttggagaaatgcaaagatatgttatttcccctgttcaagttgttgtttggattcatcagcttttgggtaatttttccatcttcaattatttctta 361  Q
    |||| ||||||||||||||||| |||||| || ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  2369256 atgaattggagaaatgcaaagacatgttaatttccctgttgaagatgttgtttggattcatcaacttttgggtaatttttccatctttaattatttctta 2369157  T
Q  362 ttttacatgtttgatcgaatgcctcatggatttacttttacaaatcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtct 461  Q
    |||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||    
T  2369156 ttttacatgtttcattgaatgcctcatggatttacttttacaactcatgttctttttgggttacaaatgtgcgttttatatttaggatttgaaattgtct 2369057  T
Q  462 ccaagtcttgttaaattcttcaatgaatccttttatttaagttgtgaattcaattctctaacaccattatgcaagggattgagaagagataaaacatggc 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2369056 ccaagtcttgttaaattcttcaatgaatccttttatttaagttgtgaattcaattctctaacaccattatgcaagggattgagaagagataaaacagggc 2368957  T
Q  562 tcttgattttgttttatttatctggatttt------ttgtaggatatactccgttctgaaaggtagtactaacaaactactctct 640  Q
    ||||||||||||||||||||  ||| ||||      |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2368956 tcttgattttgttttatttagttggtttttttgttgttgtaggatatactccgttccgaaaggtagtactaacaaactactctct 2368872  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 2372806 - 2372684
Alignment:
Q  19 gaatcatattattaatgttgtttctctgtattagactcgttgtagggattcaaagtttaattttcaaaaaagggggatcgattc----gtgaattaaatt 114  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    ||||||||||||    
T  2372806 gaatcatattattaatgatgattctctatattagactcattgtagggattcaaagtttaattttcaaaaaaaggggattgattcataggtgaattaaatt 2372707  T
Q  115 agaagtaaattaccaatattgaa 137  Q
    |||||| |||| |||||||||||    
T  2372706 agaagtgaatttccaatattgaa 2372684  T

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Target: chr6 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 361 - 638
Target Start/End: Complemental strand, 14208533 - 14208263
Alignment:
Q  361 attttacatgtttgatcgaatgcctcatggatttacttttacaaatcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtc 460  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||| | |||||||||| |||||||||     
T  14208533 attttacatgtttgattgaatgcctcatggatt-acttttacaactcatgttcatttagggttacaaatgtgtgttttatatttaggctatgaaattgtg 14208435  T
Q  461 tccaagtcttgttaaattcttcaatgaatccttttatttaagttgtgaattcaattctctaacaccattatgcaagggattgagaagagataaaacatgg 560  Q
    |||||||| ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| |||||||| |||||||||| ||    
T  14208434 tccaagtcctgttaaattcttcaatgaatccttttatttaagt------ttcaattctctaacaccattatgcaaggtattgagaatagataaaacaggg 14208341  T
Q  561 ctcttgattttgttttatttatctggattttttgtaggatatactccgttctgaaaggtagtactaacaaactactct 638  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||  ||||||||||||    
T  14208340 ctcttgattttgttttatttatccggattttttgtaggatatactccgtcccgaaaggtagtaccgacaaactactct 14208263  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 317 - 436
Target Start/End: Original strand, 19789726 - 19789846
Alignment:
Q  317 attcatcagcttttgggtaatttttccatcttcaattatttcttattttacatgtttgatcgaatgcctca-tggatttacttttacaaatcatgttctt 415  Q
    |||||||| |||||| || ||||||||||||| ||||| |||||||||||| |||| ||| |||||||||| | ||||||||||||||| | ||||||||    
T  19789726 attcatcaccttttgtgtcatttttccatcttaaattacttcttattttacttgttagattgaatgcctcatttgatttacttttacaacttatgttctt 19789825  T
Q  416 tttgggttacaaatgtgtgtt 436  Q
    ||||| |||||||||||||||    
T  19789826 tttggattacaaatgtgtgtt 19789846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 19789896 - 19789957
Alignment:
Q  492 ttttatttaagttgtgaattcaattctctaacaccattatgcaagggattgagaagagataaa 554  Q
    ||||||||||||||||||||||| | || ||||||||||| |||||||||||||| |||||||    
T  19789896 ttttatttaagttgtgaattcaactttc-aacaccattatacaagggattgagaatagataaa 19789957  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 43720518 - 43720624
Alignment:
Q  356 ttcttattttacatgtttgatcgaatgcctcat-ggattt-acttttacaaatcatgttctttttgggttacaaatgtgtgttatgtatttaggctttga 453  Q
    ||||| ||||||||||||||| ||||||||||| |||||| |||||||||| ||||  |||| |||||||||||||||| ||| |  ||||||||||||     
T  43720518 ttcttcttttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgagttctagatttaggctttgg 43720615  T
Q  454 aattgtctc 462  Q
    |||||||||    
T  43720616 aattgtctc 43720624  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 14836949 - 14837040
Alignment:
Q  406 tcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtctccaagtcttgttaaattcttcaatgaatccttttattt 499  Q
    |||||||||||||||||| ||||||| |||| |  | ||||||||| ||||||||||| | || | ||| |||||||||||||| |||||||||    
T  14836949 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctcc-actccttttacattcttcaatgaattcttttattt 14837040  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 586
Target Start/End: Original strand, 43720697 - 43720754
Alignment:
Q  529 tatgcaagggattgagaagagataaaacatggctcttgattttgttttatttatctgg 586  Q
    |||||||| |||||||||||||||||| ||||  ||||| ||| |||| |||||||||    
T  43720697 tatgcaagagattgagaagagataaaatatggaccttgaatttattttctttatctgg 43720754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 356 - 586
Target Start/End: Original strand, 28021944 - 28022180
Alignment:
Q  356 ttcttattttacatgtttgatcgaatgcctcat-ggattt-acttttacaaatcatgttctttttgggttacaaatgtgtgttatgtatttaggctttga 453  Q
    ||||| ||||||||||||||| ||||||||||| |||||| |||||||||| ||||  |||| ||||||||||||||||  || |  ||||||||||||     
T  28021944 ttcttcttttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgaattctagatttaggctttgg 28022041  T
Q  454 aattgtctccaagtcttgttaaattcttcaatgaatccttttatt--------taagttgtgaattcaattctctaacaccattatgcaagggattgaga 545  Q
    ||||||||| |  ||  |||| |||||||||||||| ||||| ||        || ||| ||||||||| | || | ||| | |||||||| ||||||||    
T  28022042 aattgtctcaatttcc-gttacattcttcaatgaattcttttcttttattcagtaggttctgaattcaactttc-agcactactatgcaagagattgaga 28022139  T
Q  546 agagataaaacatggctcttgattttgttttatttatctgg 586  Q
    |||||||||| ||||  ||||| ||| |||| |||||||||    
T  28022140 agagataaaatatggaccttgaatttattttctttatctgg 28022180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 32280552 - 32280643
Alignment:
Q  406 tcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtctccaagtcttgttaaattcttcaatgaatccttttattt 499  Q
    |||||||||||||||||||||||||| |||| |  | ||||||||| ||||||||||| | || | ||| |||||||||||||| |||||||||    
T  32280552 tcatgttctttttgggttacaaatgt-tgttttagaattaggctttaaaattgtctcc-actccttttacattcttcaatgaattcttttattt 32280643  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 32076069 - 32075978
Alignment:
Q  406 tcatgttctttttgggttacaaatgtgtgttatgtatttaggctttgaaattgtctccaagtcttgttaaattcttcaatgaatccttttattt 499  Q
    ||||||||||||| ||||||||||| ||||| |  | ||||||||||||||| ||||| | || | ||| |||||| ||||||| |||||||||    
T  32076069 tcatgttctttttaggttacaaatg-gtgttttagaattaggctttgaaattatctcc-actccttttacattctttaatgaattcttttattt 32075978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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