View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_20 (Length: 322)
Name: NF18058_low_20
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 31213793 - 31214084
Alignment:
| Q |
1 |
cctcctcacaattagaatgactctaccttcccagacactttggaacggtcctagaaaggagttgatgtctgaggaccggtcctctctctcagtcttgtgg |
100 |
Q |
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| T |
31213793 |
cctcctcacaattagaatgactctaccttcccagacactttggaacggtcctagaaaggagttgatgtctgaggaacggtcctctctct--gtcttgtgg |
31213890 |
T |
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| Q |
101 |
ggttgaaaccccttcttctcatatcctcattgtgattataagtttgtggggttgtactggaaaactgcaaattgttaaaaattataataagtttatgtaa |
200 |
Q |
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| T |
31213891 |
ggttgaaaccccttcttctcatatcctcattgtgattataagtttgtggggttgtactggaaaactgcaaattgttaaaaattataataa-tttatgtaa |
31213989 |
T |
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| Q |
201 |
ctaaatagaacactcc-----tttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattatcacggtgtgtt |
290 |
Q |
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| T |
31213990 |
ctaaatagaacactcctttaatttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattatcatggtgtgtt |
31214084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 31201329 - 31201545
Alignment:
| Q |
83 |
tctctctcagtcttgtggggttgaaaccccttcttctcatatcctcattgtgattataagtttgtgg----------ggttgtactggaaaactgcaaat |
172 |
Q |
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| T |
31201329 |
tctctctgattcttgtggggttgtagccccttcttctcatgtcctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaat |
31201428 |
T |
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| Q |
173 |
tgtt-aaaaattataataagtttatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagat |
271 |
Q |
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| T |
31201429 |
tgttcaaaaattataataagttcatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaactatattactac--aaaaaaaccaagat |
31201526 |
T |
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| Q |
272 |
ctcattatcacggtgtgtt |
290 |
Q |
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| T |
31201527 |
ctcattatcatggtgtgtt |
31201545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 91 - 290
Target Start/End: Original strand, 13605464 - 13605671
Alignment:
| Q |
91 |
agtcttgtggggttgaaaccccttcttctcatatcctcattgtgattataagtttgtgg----------ggttgtactggaaaactgcaaattgtt-aaa |
179 |
Q |
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| T |
13605464 |
agtcttgtggggttgaaagcccttcttctcatgttctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaattattcaaa |
13605563 |
T |
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| Q |
180 |
aattataataagtttatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattat |
279 |
Q |
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| T |
13605564 |
aattataataagttcatgtaattaaatagaacgctcctttgctgaaaaacaatatttggaggaacgatat---tactataaaaaatcgagatctcattat |
13605660 |
T |
|
| Q |
280 |
cacggtgtgtt |
290 |
Q |
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|| |||||||| |
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| T |
13605661 |
catggtgtgtt |
13605671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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