View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_22 (Length: 307)
Name: NF18058_low_22
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 25813466 - 25813185
Alignment:
| Q |
18 |
gttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatgg |
117 |
Q |
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| T |
25813466 |
gttacgacgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatgg |
25813367 |
T |
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| Q |
118 |
tcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813366 |
tcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaat |
25813267 |
T |
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| Q |
218 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
299 |
Q |
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| T |
25813266 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
25813185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 25788547 - 25788266
Alignment:
| Q |
18 |
gttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatgg |
117 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
25788547 |
gttactacgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaagaccctcagaacccaaggaactctttcctcttgccaatgg |
25788448 |
T |
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| Q |
118 |
tcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaat |
217 |
Q |
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| T |
25788447 |
tcttatgaggtctgtaattgatgttcactactacaacattttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaataat |
25788348 |
T |
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| Q |
218 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| |||||| |
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| T |
25788347 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcttcggtaaatcttaaatattttcattataat |
25788266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 25759213 - 25759494
Alignment:
| Q |
18 |
gttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatgg |
117 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25759213 |
gttacggcgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatgg |
25759312 |
T |
|
| Q |
118 |
tcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
25759313 |
tcttatgaggtctgtaattgatgttcactactacaacatcttcaatgatttgtttgaaaacatgattgctcaacaaaacattgtttttatttacaacaat |
25759412 |
T |
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| Q |
218 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
25759413 |
cgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaatattttcattataat |
25759494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 25862864 - 25862694
Alignment:
| Q |
104 |
cctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgatt |
203 |
Q |
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|||||||| ||||| |||||| | || || |||||||| |||||||||| |||||| | ||| |||| ||||||| || |||||| || ||||||| |
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| T |
25862864 |
cctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgatt |
25862765 |
T |
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| Q |
204 |
ttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
274 |
Q |
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||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
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| T |
25862764 |
atatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
25862694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 25 - 299
Target Start/End: Complemental strand, 12405522 - 12405248
Alignment:
| Q |
25 |
cgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatg |
124 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12405522 |
cgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatg |
12405423 |
T |
|
| Q |
125 |
aggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcat |
224 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405422 |
aggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcat |
12405323 |
T |
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| Q |
225 |
cggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405322 |
cggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaaaaatttcagtataat |
12405248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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