View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_24 (Length: 281)
Name: NF18058_low_24
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 49477586 - 49477372
Alignment:
| Q |
52 |
aagaaaataagtgtacttttattaaaaattaatttatctccaaatttataacggcattttaaagagannnnnnnnn-attattttgtgcactaaatttat |
150 |
Q |
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| T |
49477586 |
aagaaaataagtgtacttttattaaaaactaatttatctccaaatttataacggcattttaaagagattttttttttattattttgtgcactaaatttat |
49477487 |
T |
|
| Q |
151 |
acaaacaattgcggaattttgagtttgaatctgaatgtcacgaataataatattgannnnnnncaattaattaaaatgtttgtttgccaaataattataa |
250 |
Q |
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| T |
49477486 |
gcaaacaattgcggaattttgagtttgaatctgaatgtcacaaataataatattgatatttttcaattaattaaaatgtttgtttgacaaataattataa |
49477387 |
T |
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| Q |
251 |
ttaaatgaaatattt |
265 |
Q |
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||||||||||||||| |
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| T |
49477386 |
ttaaatgaaatattt |
49477372 |
T |
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