View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_25 (Length: 277)
Name: NF18058_low_25
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_25 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 14431552 - 14431444
Alignment:
| Q |
169 |
ttctttgttcatgaacatggaatatagaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatgaacgtttac |
268 |
Q |
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| T |
14431552 |
ttctttgttcatgaacatggaatatagaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatggacgtttac |
14431453 |
T |
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| Q |
269 |
aacgtcgtt |
277 |
Q |
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| T |
14431452 |
gccgtcgtt |
14431444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 15275350 - 15275415
Alignment:
| Q |
194 |
agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatg |
259 |
Q |
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| T |
15275350 |
agaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttctcccagatg |
15275415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 15263718 - 15263774
Alignment:
| Q |
194 |
agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttc |
250 |
Q |
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| T |
15263718 |
agaaccttagaactcaacatgatttccgcaaaagatctcaaagatgttaatattttc |
15263774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 14431702 - 14431665
Alignment:
| Q |
88 |
aaattataaataccttctgttacatagtataaacatcc |
125 |
Q |
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| T |
14431702 |
aaattataaataccttctgttacatcgtataaacatcc |
14431665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 15251204 - 15251267
Alignment:
| Q |
194 |
agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaaga |
257 |
Q |
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| T |
15251204 |
agaaccttagaacttaacataatatgtgcaaaagatctcaaaggttttaatcttttctccaaga |
15251267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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