View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_26 (Length: 276)

Name: NF18058_low_26
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18058_low_26
NF18058_low_26
[»] chr3 (2 HSPs)
chr3 (18-276)||(51067749-51068007)
chr3 (170-222)||(54432868-54432920)
[»] chr7 (6 HSPs)
chr7 (170-221)||(18740836-18740887)
chr7 (170-222)||(5776542-5776594)
chr7 (170-221)||(24129857-24129908)
chr7 (165-223)||(45054903-45054961)
chr7 (170-222)||(28950282-28950334)
chr7 (173-221)||(33124200-33124248)
[»] chr1 (5 HSPs)
chr1 (165-223)||(13645688-13645746)
chr1 (170-221)||(24575412-24575463)
chr1 (165-223)||(43090004-43090062)
chr1 (173-222)||(38061570-38061619)
chr1 (237-273)||(30211822-30211858)
[»] chr6 (4 HSPs)
chr6 (171-223)||(22295466-22295518)
chr6 (171-222)||(25181143-25181194)
chr6 (172-222)||(472937-472987)
chr6 (170-222)||(13311459-13311511)
[»] chr4 (3 HSPs)
chr4 (170-221)||(48151714-48151765)
chr4 (165-223)||(52705703-52705761)
chr4 (170-222)||(48977115-48977167)
[»] chr8 (1 HSPs)
chr8 (165-223)||(43966992-43967050)
[»] chr5 (2 HSPs)
chr5 (165-223)||(4983937-4983995)
chr5 (165-223)||(41782804-41782862)
[»] chr2 (2 HSPs)
chr2 (165-223)||(2647572-2647630)
chr2 (170-222)||(33830989-33831041)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 51068007 - 51067749
Alignment:
Q  18 aaacaagtcccgcatcggttgtttatgtaacattgagaggtgaataaggctataaacaagactattgtatcnnnnnnnaaagtagataacacgtttttaa 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||    
T  51068007 aaacaagtcccacatcggttgtttatgtaacattgagaggtgaataaggctataaacaagactattgtatctttttttaaggtagataacacgtttttaa 51067908  T
Q  118 gcaaattttctatatgcttaattttttaggcaaactttttgtggttcatgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaact 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  51067907 gcaaattttctatatgcttgattttttaggcaaactttttgtggttcatgatcctaacgagttgaatcgagttgttcgttaattttaaatgagtcgaact 51067808  T
Q  218 cgagccnnnnnnntgatttgtatcgaagtcaagttgagtttcgagccgaactaattctt 276  Q
    ||||||       ||||||||||||||||| ||||||||||||||||||||||||||||    
T  51067807 cgagccaaaaaaatgatttgtatcgaagtcgagttgagtttcgagccgaactaattctt 51067749  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 54432868 - 54432920
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||  ||| |||||||||||| ||||||||||||| |||||||||||    
T  54432868 cctaacgagtcgaaccgagttgttcgtgaattttaaacgagccgaactcgagc 54432920  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 18740836 - 18740887
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgag 221  Q
    |||||||||| ||| |||||||||||| || |||||||||||||||||||||    
T  18740836 cctaacgagccgaaccgagttgttcgtgaactttaaacgagtcgaactcgag 18740887  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 5776542 - 5776594
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||    
T  5776542 cctaacgagccgaaccgaattgttcgtgaattttaaacgagccgaactcgagc 5776594  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 24129857 - 24129908
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgag 221  Q
    |||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||    
T  24129857 cctaacgagccgaattgagttgttctttaattttaaatgagtcgaacacgag 24129908  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 45054961 - 45054903
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  45054961 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 45054903  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 28950282 - 28950334
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||||||| |||  ||||||| || |||||||||| |||||||||||    
T  28950282 cctaacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcgagc 28950334  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 33124248 - 33124200
Alignment:
Q  173 aacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgag 221  Q
    |||||| |||| |||||||||||| || |||||||||| ||||||||||    
T  33124248 aacgagttgaaccgagttgttcgtgaactttaaacgagccgaactcgag 33124200  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 13645688 - 13645746
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| ||||||||||||||  |||||| |||| ||||||||| ||||||||||||||||    
T  13645688 atgaacctaacgagctgaacagagttgctcgtgaattttaaatgagtcgaactcgagcc 13645746  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 24575463 - 24575412
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgag 221  Q
    |||||||||| ||| |||||||||||| || |||||||||| ||||||||||    
T  24575463 cctaacgagccgaaccgagttgttcgtgaactttaaacgagccgaactcgag 24575412  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 43090004 - 43090062
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  43090004 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 43090062  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 38061570 - 38061619
Alignment:
Q  173 aacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    ||||||||||| |||  ||||||| ||||||||||||| |||||||||||    
T  38061570 aacgagctgaaccgaactgttcgtgaattttaaacgagccgaactcgagc 38061619  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 30211858 - 30211822
Alignment:
Q  237 gtatcgaagtcaagttgagtttcgagccgaactaatt 273  Q
    |||||||| || |||||||||||||||||||||||||    
T  30211858 gtatcgaactcgagttgagtttcgagccgaactaatt 30211822  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 22295518 - 22295466
Alignment:
Q  171 ctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    ||||||||||||| ||||||| |||| ||||||||| ||| ||||||||||||    
T  22295518 ctaacgagctgaaccgagttgctcgtgaattttaaatgagccgaactcgagcc 22295466  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 25181143 - 25181194
Alignment:
Q  171 ctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    ||||||||| |||||||  |||| || |||||||||||||||||||||||||    
T  25181143 ctaacgagccgaatcgaactgtttgtgaattttaaacgagtcgaactcgagc 25181194  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 472987 - 472937
Alignment:
Q  172 taacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||||||| |  ||||||| || ||||||||||||||||||||||    
T  472987 taacgagctgaatcaaactgttcgtgaactttaaacgagtcgaactcgagc 472937  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 13311511 - 13311459
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||  ||||||||| |||||| || |||||||||| |||||||||||    
T  13311511 cctaacgagtcgaatcgagtggttcgtgaactttaaacgagccgaactcgagc 13311459  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 48151714 - 48151765
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgag 221  Q
    |||||| ||||||| ||||| |||||| || |||||||||||||||||||||    
T  48151714 cctaacaagctgaaccgagtagttcgtgaactttaaacgagtcgaactcgag 48151765  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 52705761 - 52705703
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  52705761 atgaacctaacgagccgaaccgagttgctcgtaaactttaaacgagccgaactcgagcc 52705703  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 48977167 - 48977115
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||| ||| | | |||||||| ||||||||||||| |||||||||||    
T  48977167 cctaacgagccgaaccaaattgttcgtgaattttaaacgagccgaactcgagc 48977115  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 43967050 - 43966992
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  43967050 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 43966992  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 4983937 - 4983995
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  4983937 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 4983995  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 41782862 - 41782804
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  41782862 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 41782804  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 2647572 - 2647630
Alignment:
Q  165 atgatcctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagcc 223  Q
    |||| |||||||||| ||| ||||||| |||| || |||||||||| ||||||||||||    
T  2647572 atgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcc 2647630  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 33831041 - 33830989
Alignment:
Q  170 cctaacgagctgaatcgagttgttcgttaattttaaacgagtcgaactcgagc 222  Q
    |||||||||| ||| ||| |||||||| || |||||||||| |||||||||||    
T  33831041 cctaacgagccgaaccgaattgttcgtgaactttaaacgagccgaactcgagc 33830989  T

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