View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18058_low_36 (Length: 249)
Name: NF18058_low_36
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18662206 - 18662444
Alignment:
| Q |
1 |
tctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaagctaccgtcaacagacttgcaaggaactgatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662206 |
tctctgataattgctgcagctgcctgctattataactggatatttttccaacggattttcttaccaaagctaccgtcaacagacttgcaaggaactgatc |
18662305 |
T |
|
| Q |
101 |
tccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatcttaacatggatctgtcctatttctgctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662306 |
tccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatcttaacatggatctgtcctatttctgctat |
18662405 |
T |
|
| Q |
201 |
ccccagttgccaagtttcacttcttcataactgcctttg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662406 |
ccccagttgccaagtttcacttcttcataactgcctttg |
18662444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15081615 - 15081381
Alignment:
| Q |
1 |
tctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaagctaccgtcaacagacttgcaaggaactgatc |
100 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15081615 |
tctctgataattgctgctgctgcttgctattataactggatatttttccaacggactttcttaccaaagctaccgtcaacagacttgcaaggaactgatc |
15081516 |
T |
|
| Q |
101 |
tccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatcttaacatggatctgtcctatttctgctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15081515 |
tccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactg----agtcggacatcttaacatggatctgtcctatttctgctat |
15081420 |
T |
|
| Q |
201 |
ccccagttgccaagtttcacttcttcataactgcctttg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15081419 |
ccccagttgccaagtttcacttcttcataactgcctttg |
15081381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University