View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_37 (Length: 246)
Name: NF18058_low_37
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_37 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 27777290 - 27777515
Alignment:
| Q |
18 |
cttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgc |
117 |
Q |
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| T |
27777290 |
cttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtactaagaagaagaagttacatgaataatgatgatgatgctattgc |
27777389 |
T |
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| Q |
118 |
agctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatg |
217 |
Q |
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| T |
27777390 |
agctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgaaaggaacctactgcctctaatcaaagtattgaagagaagaagatg |
27777489 |
T |
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| Q |
218 |
aacgacgaaggtgaaacagaactagggtc |
246 |
Q |
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| T |
27777490 |
a---atgaaggtgaaacagaactagggtc |
27777515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 27782671 - 27782446
Alignment:
| Q |
18 |
cttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgc |
117 |
Q |
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| T |
27782671 |
cttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggttctaagaagaagaagttacatgaataatgatgatgatgctattgc |
27782572 |
T |
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| Q |
118 |
agctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatg |
217 |
Q |
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| T |
27782571 |
agctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgtaaggaaccttctgcctctaatcaaagtattgatgagaagaagatg |
27782472 |
T |
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| Q |
218 |
aacgacgaaggtgaaacagaactagggtc |
246 |
Q |
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| T |
27782471 |
a---atgaaggtgaaacagaactagggtc |
27782446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 27780947 - 27781005
Alignment:
| Q |
158 |
acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagat |
216 |
Q |
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| T |
27780947 |
acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagat |
27781005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27780704 - 27780762
Alignment:
| Q |
18 |
cttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacgacaggtgcta |
76 |
Q |
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| T |
27780704 |
cttcctttgcacagagctatgatgatcagtttctaccacccaagaaacggcaggcgcta |
27780762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 441055 - 441005
Alignment:
| Q |
162 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaaga |
212 |
Q |
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| T |
441055 |
cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaaga |
441005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 44989837 - 44989777
Alignment:
| Q |
162 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacga |
222 |
Q |
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| T |
44989837 |
cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacga |
44989777 |
T |
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