View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_4 (Length: 565)
Name: NF18058_low_4
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 12 - 554
Target Start/End: Complemental strand, 40212505 - 40211969
Alignment:
| Q |
12 |
atgaaattgtatatattagtattaggatttgcaaaatgcaataagtatttctgtattttacgttgccgtccaaaatctgaaccgcgttaaagaaatccca |
111 |
Q |
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| T |
40212505 |
atgacattgtatatattagtattaggatttgcaaaatgcaataagtatttctgtattttacgttgccgtccaaaatctgaaccgcgttaaagaaatccca |
40212406 |
T |
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| Q |
112 |
acagaaaaccgtgttgacatgttttctgttttgagttctaagggaagtgaattaatattttataagatacatattatttgatagtttatactttataata |
211 |
Q |
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| T |
40212405 |
acagaaaaccgtgttgacatgttttctgttttgagttctaagggaagtgaattaatattttataagatacatattattttatagtttatactttataata |
40212306 |
T |
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| Q |
212 |
ttaatgcttaaactaccagaaacgaagttcatgatatgttagttagtagtaccccaaagtattagcttctatgtcacatgcatatgttgttgacaagaat |
311 |
Q |
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| T |
40212305 |
ttaatgcttaaactaccagaaacgaagttcatgatatgttagttagtagtaccccaaagtattagcttctatgtcacatgcatatgttgttgacaagaat |
40212206 |
T |
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| Q |
312 |
ttggaaatcgaccgaaattcctacacctaaccgttgaataaactcaatgatccaaatttcatttctttattgtgtctttgattaagaattaatgaagcct |
411 |
Q |
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| T |
40212205 |
ttggaaatcgaccgaaattcctacacctaatcgttgaataaactcaatgatccaaa-----tttctttattgtgtctttgattaggaattaatgaagcca |
40212111 |
T |
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| Q |
412 |
taagatttgcaaagcttctcttagcacgcaagtgatgggtgatttgtataatatttattattgttatattttgaaggtaaacagcttaatacagaatctg |
511 |
Q |
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| T |
40212110 |
taagatttgcaaagcttctcttagcacgcaactgatgggtgatttgtataatatttattattgttatattttgaaggtaaacaacttaatacataatctg |
40212011 |
T |
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| Q |
512 |
ctgacatatcagattagtgataagagtttgattatgtagtttt |
554 |
Q |
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| T |
40212010 |
c-gacatatcagattagtgataagagtttgattttgtagtttt |
40211969 |
T |
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