View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_40 (Length: 237)

Name: NF18058_low_40

Description: NF18058

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18058_low_40

[»] chr3 (2 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 81; E-Value: 3e-38

Query Start/End: Original strand, 135 - 227

Target Start/End: Complemental strand, 25993605 - 25993513

Alignment:

Q	135	taattttatggtatgattgaccgtttgtgtatgtagtgtccaaaataaacatatctatctaactttctgctactgcactgtatttttctctgc	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25993605	taattttatggtatgattgaccgtttgtgtatgtagtgtccaaaatgaacataactatctaactttctgctactgcattgtatttttctctgc	25993513	T

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Target: chr3; HSP #2

Raw Score: 69; E-Value: 4e-31

Query Start/End: Original strand, 135 - 227

Target Start/End: Complemental strand, 25989513 - 25989421

Alignment:

Q	135	taattttatggtatgattgaccgtttgtgtatgtagtgtccaaaataaacatatctatctaactttctgctactgcactgtatttttctctgc	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	25989513	taattttatggtatgattgaccatttgtgtatgcagtgtccaaaatgaacatatctatctaactttatgcaactgcactatatttttctctgc	25989421	T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 135 - 221

Target Start/End: Complemental strand, 4571093 - 4571007

Alignment:

Q	135	taattttatggtatgattgaccgtttgtgtatgtagtgtccaaaataaacatatctatctaactttctgctactgcactgtattttt	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|
T	4571093	taattttatggtatggttgactatttgtgtatgcagtgtccaaaatgaacacaaaaatctgagtttctgctactgcattgcattttt	4571007	T

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