View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18058_low_5 (Length: 527)

Name: NF18058_low_5
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18058_low_5
NF18058_low_5
[»] chr5 (1 HSPs)
chr5 (86-511)||(988210-988656)
[»] chr6 (2 HSPs)
chr6 (25-86)||(15674477-15674539)
chr6 (25-86)||(23346897-23346959)
[»] chr7 (2 HSPs)
chr7 (25-86)||(13440701-13440763)
chr7 (192-225)||(38135308-38135341)
[»] chr4 (4 HSPs)
chr4 (25-86)||(23872906-23872968)
chr4 (25-86)||(55299260-55299322)
chr4 (25-69)||(20675670-20675714)
chr4 (29-69)||(2632050-2632090)
[»] chr1 (3 HSPs)
chr1 (25-86)||(32352740-32352802)
chr1 (25-86)||(48072861-48072923)
chr1 (192-225)||(8676960-8676993)
[»] chr3 (3 HSPs)
chr3 (25-69)||(6175926-6175970)
chr3 (25-68)||(29310056-29310099)
chr3 (192-228)||(37534294-37534330)
[»] chr2 (3 HSPs)
chr2 (25-85)||(26894043-26894104)
chr2 (25-85)||(26899482-26899543)
chr2 (26-54)||(39116466-39116494)
[»] scaffold0279 (1 HSPs)
scaffold0279 (192-224)||(17693-17725)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 86 - 511
Target Start/End: Complemental strand, 988656 - 988210
Alignment:
Q  86 tgtaaatgataatgttagaaattaagttgagtttannnnnnngtgggagcaagaaaattgtgagagattaaactagatcttctctcttttatcttttaat 185  Q
    |||||||| |||||||||| |||||||||||||||       ||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  988656 tgtaaatgttaatgttagagattaagttgagtttatttttttgtgggtgcgagaaaattgtgagggattaaattagatcttctctcttttatcttttaat 988557  T
Q  186 gagttggagaaactattaaaaaagattttgagattaatgaattgaacta------------taatataacattatgaagtaacttga-------atctgc 266  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||            |||||||||||||||| ||||||| |       ||||||    
T  988556 gaattggagaaactattaaaaaagattttgagattaacgaattgaattaaaatataatttataatataacattatgacgtaacttaattcatgcatctgc 988457  T
Q  267 aatgcatgctctaattctaaatatgaat---attaaatatgataatgannnnnnnnatgttaaatcaagagtcacatatctcataccaaatcagtgtgtc 363  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||     
T  988456 aatgcatgctctaattctaaatatgaatcttattaaatatgataatgattttttt-atgttaaatcaagagtcacatatctcatactaaatcagtgtgta 988358  T
Q  364 actatccataatagacacgttgtttatgttattgtttgcatgtctcctcttggtaattatcaatcttttgctgttaaatatgtgtcattaactctttcat 463  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  988357 actatccataatagacccgttgtttatgttattgtttgcatgtctcctcttggtaattatcaatcttttgctgtaaaatatgtgtcattaactctttcat 988258  T
Q  464 tcgactgaaatgtttttatcaaatgtggcaagttagaaacgacctata 511  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  988257 tcgagtgaaatgtttttatcaaatgtggcaagttagaaacgacctata 988210  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 15674477 - 15674539
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  15674477 ttttcctaacaaagctaaattaaactccttcaatttccgcacccccaaaccgccatactcctt 15674539  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 23346959 - 23346897
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  23346959 ttttcctaacaaagctaaattaaactccttcaatttccgcacccccaaaccgcgatactcctt 23346897  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 13440701 - 13440763
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgcacc-ccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  13440701 ttttcctaacaaagctaaattaaactccttcaatttccgcaccaccaaaccgccacactcctt 13440763  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 38135341 - 38135308
Alignment:
Q  192 gagaaactattaaaaaagattttgagattaatga 225  Q
    |||||||||||||||||||||| |||||||||||    
T  38135341 gagaaactattaaaaaagatttagagattaatga 38135308  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 23872968 - 23872906
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  23872968 ttttcctaacaaagctaaattaaactccttcaatttccgtacccccaaaccgccatactcctt 23872906  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 55299260 - 55299322
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  55299260 ttttcctaacaaagctaaattaaactccttcaatttccgcacccccaaaccgccacactcctt 55299322  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 20675670 - 20675714
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgcacccc 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20675670 ttttcctaacaaagctaaattaaactccttcaatttccgcacccc 20675714  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 2632050 - 2632090
Alignment:
Q  29 cctaacaaagctaaattaaactccttcaatttccgcacccc 69  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  2632050 cctaacaaaactaaattaaactccttcaatttccgcacccc 2632090  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 32352802 - 32352740
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcctt 86  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  32352802 ttttcctaacaaagctaaattaaactccttcaatttcctcacccccaaaccgccatactcctt 32352740  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 48072923 - 48072861
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgcacc-ccaaactgccatactcctt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  48072923 ttttcctaacaaagctaaattaaactccttcaatttccgcacctccaaaccgccacactcctt 48072861  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 8676993 - 8676960
Alignment:
Q  192 gagaaactattaaaaaagattttgagattaatga 225  Q
    |||||||||||||||||||||| |||||||||||    
T  8676993 gagaaactattaaaaaagatttagagattaatga 8676960  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 6175970 - 6175926
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgcacccc 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6175970 ttttcctaacaaagctaaattaaactccttcaatttccgcacccc 6175926  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 29310056 - 29310099
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgcaccc 68  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29310056 ttttcctaacaatgctaaattaaactccttcaatttccgcaccc 29310099  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 37534330 - 37534294
Alignment:
Q  192 gagaaactattaaaaaagattttgagattaatgaatt 228  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  37534330 gagaaactattaagaaagatcttgagattaatgaatt 37534294  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26894104 - 26894043
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcct 85  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||| | |||||||||    
T  26894104 ttttcctaacaaagttaaattaaactccttcaacttccgcacccccaaaccgtcatactcct 26894043  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26899543 - 26899482
Alignment:
Q  25 ttttcctaacaaagctaaattaaactccttcaatttccgca-ccccaaactgccatactcct 85  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||| | |||||||||    
T  26899543 ttttcctaacaaagttaaattaaactccttcaacttccgcacccccaaaccgtcatactcct 26899482  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 39116494 - 39116466
Alignment:
Q  26 tttcctaacaaagctaaattaaactcctt 54  Q
    |||||||||||||||||||||||||||||    
T  39116494 tttcctaacaaagctaaattaaactcctt 39116466  T

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Target: scaffold0279 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 17693 - 17725
Alignment:
Q  192 gagaaactattaaaaaagattttgagattaatg 224  Q
    |||||||||||||||||||||| ||||||||||    
T  17693 gagaaactattaaaaaagatttagagattaatg 17725  T

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